source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2005-05-30	jprocter	comments	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	Added clustalW 'realignment' (primitive)	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	added default ClustalWS or MuscleWS to remove gaps.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	propagated use of jalview.util.GapChars for gap removal.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	more robust parsing for DBset/DBname\|id1\|id2 type ids	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	modified history for redundancy removal.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	fixed stacktrace potential for pairwise alignment action.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	Modified output on stdout for similarity matrix.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	images moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	fixed brain interruption bug.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	ignores blank lines read in and write out	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	right ordering for RedundancyPanel constructor	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	added proper state check for failedJob flag.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Added jobFail state	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	better recognition of MSF files.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Added menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	edits	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	image moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	pref	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Image moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	identity changed	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste menus added	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	C&P changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Check if colos are null	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Add cut and paste menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	CutAndPaste changed	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Added nicer header formatting for MSFfile output.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	recovered changes from v 1.84	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Check if usrCol is null	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	New cut and paste	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Jpredfile now uses the PileUpfile io class.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Addred GapChar string for convenient regex construction	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Response to bug mantis?id=8187 - some quick hacks to...	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Remove desc for conserve graph	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Old MSF Format writer now renamed.	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fixed use of PID rather than 'Comparison' Alignment...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fairly pointless catch exception error information...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fixed redundancy Undo and allowed it to work on UNALIGN...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	bug fix in jpred client. TreeViewer display state and...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	partially updated help. Added separate treeviewing...	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	check for null residues	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	DOnt add Conservation graph to every residue	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	toString modified	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	reset colours added	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	more clustalx bugs fixed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	getHexString added	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	all can threshold	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	output to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	layout changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	capitals	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	format changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	remove scrollpane	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	Capitalise	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	c&p changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	use getHexString in util	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	usercolours changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	output text to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	all colours can threshold	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	selectiongroup could be null	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	saves usercolours	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	formatforoutput never used	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	output values to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	toString method added	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	XML schema changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	usercolourscheme changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	formatting changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	all colours can threshold	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	usercolours changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	remove comment	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	can output details to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	usercolours added	commit \| commitdiff \| tree \| snapshot
2005-05-25	jprocter	added jalview.browser property so a linux user can...	commit \| commitdiff \| tree \| snapshot
2005-05-25	jprocter	doh - compile before commit!	commit \| commitdiff \| tree \| snapshot
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	commit \| commitdiff \| tree \| snapshot
2005-05-25	jprocter	Improved consistency between JPredWS and MsaWS	commit \| commitdiff \| tree \| snapshot
2005-05-25	jprocter	base class for web service clients.	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	title parameter for single sequence prediction.	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	Added more firePropertyChange calls - mainly for sequen...	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	extended the UpdatePlaceholders to check for any new...	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	added PropertyChangeListeners for alignviewport.alignme...	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	remove .	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	URL getresource adds %20 for spaces. Use user.dir instead	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	filefilter might not be JalviewFileFilter	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	formatting.	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	equalsIgnoreCase	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	setDefaultFileFormat	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	replace get with elementAt	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	setgraphics black	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	slight changes.	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	added sorting alignments documentation.	commit \| commitdiff \| tree \| snapshot
2005-05-24	amwaterhouse	setgraphics black	commit \| commitdiff \| tree \| snapshot
2005-05-24	jprocter	several ordering bug fixes.	commit \| commitdiff \| tree \| snapshot
2005-05-23	jprocter	Added PadGaps and made treeSortMenu dynamic (it gets...	commit \| commitdiff \| tree \| snapshot
2005-05-23	jprocter	added some assertions and rangechecks for insert/delete...	commit \| commitdiff \| tree \| snapshot
2005-05-23	jprocter	added getSequencesInOrder (part of refactor from AlignP...	commit \| commitdiff \| tree \| snapshot
2005-05-23	jprocter	editMenuPadGaps and sortByTree/sort items	commit \| commitdiff \| tree \| snapshot
2005-05-23	jprocter	fixed window title names for prediction on MSA or Sequence.	commit \| commitdiff \| tree \| snapshot
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