jalview.git
2020-10-28 Jim Procterfix for JAL-3765
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before...
2020-10-15 Ben SoaresMerge branch 'develop' into blocker/JAL-3611_space_char...
2020-09-28 Ben SoaresJAL-3753 ensure correct dependencies for shadowJar...
2020-09-28 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl...
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope...
2020-09-23 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl...
2020-09-23 Ben SoaresJAL-3477 Added 10k leeway to amount of memory reserved...
2020-09-23 Ben SoaresJAL-3753 Resources seen in tests and appropriate filter...
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
2020-09-20 Ben SoaresJAL-3753 put resources in gradle run and test path
2020-09-18 Ben SoaresJAL-3753 JAL-3754 first rejig
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to...
2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (curren...
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands
2020-09-04 Ben SoaresJAL-3679 Added externally specified plugins dir to... feature/JAL-3615gzipXfam
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to...
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0
2020-08-31 gmungocJAL-1191 use Cache.log for logging
2020-08-31 gmungocJAL-1191 reduce logging level for warnings
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored...
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for...
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report...
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to...
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-03 Ben SoaresJAL-3477 added help documentation for executable jar...
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
2020-07-20 gmungocJAL-3597 slight tidying of code and Javadoc, passmark...
2020-07-14 gmungocJAL-1421 last change tidied up properly
2020-07-14 gmungocJAL-1421 types added to nameHash and nodeHash maps
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet...
2020-07-06 gmungocJAL-1424 slight tidying of reporting
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
2020-07-06 gmungocJAL-3518 Spanish text for 'write features'
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu...
2020-07-06 gmungocJAL-3570 updated external help links
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for...
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam
2020-06-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands
2020-06-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer()
2020-06-28 gmungocJAL-3551 PyMOL command constants tidied
2020-06-28 gmungocJAL-3551 fit to window (zoom) command for PyMOL
2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections...
2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution
2020-06-25 gmungocJAL-2010 unused prototype method removed
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu...
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of...
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer...
2020-06-08 soaresJAL-3446 new Jmol 15.1.3 jar added to j11lib, old j11li...
2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,...
2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc...
2020-06-02 Ben SoaresJAL-3225 Using Gradle Git-Version plugin to set gitHash...
2020-06-02 soaresJAL-3225 small fixes for building within Eclipse
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in...
2020-06-01 gmungocJAL-3518 test result corrected
2020-06-01 gmungocJAL-3518 add alwaysRun = true [sigh]
2020-06-01 gmungocJAL-3518 more test coverage for structure commands
2020-05-29 gmungocJAL-2422 test updated
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol
2020-05-28 gmungocJAL-3551 corrected Pymol open session command
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands...
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