source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2007-04-17	jprocter	proper copy constructor (not clone)	commit \| commitdiff \| tree \| snapshot
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	commit \| commitdiff \| tree \| snapshot
2007-04-17	amwaterhouse	Add system.out for Mcview / Jmol detection	commit \| commitdiff \| tree \| snapshot
2007-04-17	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2007-04-16	amwaterhouse	drawSequence must be synchronized	commit \| commitdiff \| tree \| snapshot
2007-04-16	amwaterhouse	Too many calls to paintAlignment	commit \| commitdiff \| tree \| snapshot
2007-04-13	amwaterhouse	FeatureRenderer takes alignmentPanel	commit \| commitdiff \| tree \| snapshot
2007-04-13	amwaterhouse	Check alignment has same sequence	commit \| commitdiff \| tree \| snapshot
2007-04-12	jprocter	basic support for multi-exon CDS features	commit \| commitdiff \| tree \| snapshot
2007-04-12	amwaterhouse	Number pad keys can be used in cursor mode	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	SetTargetColour before dialog.show	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Modified to compile applet with Jmol jar present	commit \| commitdiff \| tree \| snapshot
2007-04-11	jprocter	fixed for display of 'null' group features	commit \| commitdiff \| tree \| snapshot
2007-04-11	jprocter	fixed base lookup bug in dna pairwise alignment and...	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Can add features with no group	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Adjustment for hidden columns	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Use same mouse events as scalePanel	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Amend features/annotations in applet	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	Used several places	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	If hiddenColumns are null, then column is viisble	commit \| commitdiff \| tree \| snapshot
2007-04-11	amwaterhouse	featureAdded not in applet	commit \| commitdiff \| tree \| snapshot
2007-04-05	amwaterhouse	Paste menu item dispalyed on right click. Memory settin...	commit \| commitdiff \| tree \| snapshot
2007-04-05	amwaterhouse	Pasted file doesnt have title and not reloadable	commit \| commitdiff \| tree \| snapshot
2007-04-05	amwaterhouse	call getAllframes on desktop instance	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	newFEatures flag for seq type	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	Use newFeatures flag	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	combobox for overlapping features	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	paintALignment	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	flag for dasCoordSysFound added	commit \| commitdiff \| tree \| snapshot
2007-04-04	amwaterhouse	Throw exception if pdb result size is zero	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	doco change.	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	update settings for new groups (always displayed) and...	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	bugfix + create/amend whilst feature panel open (still...	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	typo fix.	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Allow for scroll bar height	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	featuresAdded method introduced for consistency with...	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	fr==null check.	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	feature group state and type order preference storage...	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	featuresAdded call for transferred PDB features	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	featuresAdded() method, state change support between...	commit \| commitdiff \| tree \| snapshot
2007-04-02	jprocter	added feature type order preference attribute and visib...	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	New seq feature name not added here	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	getAllFeaturesAtRes replace by findFeaturesAtRes	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	addElement	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	destroy destroyed	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	destroy destroyed	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Destroy alignment moved to finalize	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Chain might be null	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Destroy Alignment when closing frame	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Destroy aligment method added	commit \| commitdiff \| tree \| snapshot
2007-04-02	amwaterhouse	Must allow for scrollbar height	commit \| commitdiff \| tree \| snapshot
2007-03-27	amwaterhouse	Pick atom highlighted	commit \| commitdiff \| tree \| snapshot
2007-03-27	amwaterhouse	Updated PDB loading params	commit \| commitdiff \| tree \| snapshot
2007-03-26	amwaterhouse	Jmol calls user colours	commit \| commitdiff \| tree \| snapshot
2007-03-26	amwaterhouse	Jalview colour schemes added	commit \| commitdiff \| tree \| snapshot
2007-03-26	amwaterhouse	Add seq mapping for multiple seq 2 pdbs	commit \| commitdiff \| tree \| snapshot
2007-03-26	amwaterhouse	Menu changes	commit \| commitdiff \| tree \| snapshot
2007-03-26	jprocter	fix single sequence features added rendering bug.	commit \| commitdiff \| tree \| snapshot
2007-03-26	jprocter	PDB residue numberings transfered and alignment view...	commit \| commitdiff \| tree \| snapshot
2007-03-26	jprocter	grammar.	commit \| commitdiff \| tree \| snapshot
2007-03-23	amwaterhouse	updates to console	commit \| commitdiff \| tree \| snapshot
2007-03-23	amwaterhouse	slide is transparent to hidden columns	commit \| commitdiff \| tree \| snapshot
2007-03-23	jprocter	generalised feature attribute parsing slightly (no...	commit \| commitdiff \| tree \| snapshot
2007-03-23	jprocter	bugfix for 1.1 conversion.	commit \| commitdiff \| tree \| snapshot
2007-03-23	jprocter	reenable canceldas after a cancel and subsequence fetch	commit \| commitdiff \| tree \| snapshot
2007-03-23	jprocter	lastSeq==null to force refresh of sequencefeature array...	commit \| commitdiff \| tree \| snapshot
2007-03-23	jprocter	removed Iterator usage.	commit \| commitdiff \| tree \| snapshot
2007-03-23	amwaterhouse	run and halt buttons must have listeners added	commit \| commitdiff \| tree \| snapshot
2007-03-23	amwaterhouse	loadingFromArchive flag added	commit \| commitdiff \| tree \| snapshot
2007-03-23	amwaterhouse	run halt hidden, help moved to menu item for stupid...	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	save structures	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Commented out userDefColours for compilation. Class...	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Now a JPanel, plus some modifications	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Check exploded pos is not the same as current frame	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Set gatherViewsHere false when making a new tab	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Saves structures	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Jalview colours added to Jmol	commit \| commitdiff \| tree \| snapshot
2007-03-22	amwaterhouse	Saves Jmol status	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	DAS features mapped to local reference frame	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	translate aligned cDNA to aligned peptide	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	retrieve and parse EMBL records to view exons.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	convenience method to get visible selected region.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	null exception when annotation created with no description.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	New method for mapping from common database sources...	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	note about selenocystine.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	disambiguate jalview.datamodel.Mapping from castor...	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	initial support for EMBL file parsing.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	equals operation used for canonicalisation of DBRefList...	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	mapping implemented by MapList added to DBRefEntry.	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	javadoc typo	commit \| commitdiff \| tree \| snapshot
2007-03-19	jprocter	copy constructor	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	Uncomment graphics 2d bit	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	Launch applet jmol	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	Use paintAlignment	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	check conservation length	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	Structure listener	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	remove p+3 < query.length	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	No longer use ref to seqcanvas for painting	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	blank space for chain name if empty	commit \| commitdiff \| tree \| snapshot
2007-02-27	amwaterhouse	keep record of atomIndeX	commit \| commitdiff \| tree \| snapshot
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