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jalview.git
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... commit | commitdiff | tree | snapshot
2016-08-25 gmungocJAL-2178 remove duplicate Uniprot db source commit | commitdiff | tree | snapshot
2016-08-25 gmungocJAL-1424 duplicate key removed commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 FIXME for test failure commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 TODO - verify Embl primary refs get added commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 tidy up and comments for DBRefFetcher commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 javadoc for sifts mapping method commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 prevent SIFTS mappings for sequences that... commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 stricter check for 1:1 mapping (same numbering... commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 rejig test to minimally verify patch that... commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 formatting commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 DBRefEntry.isPrimary() minimal test & implemen... commit | commitdiff | tree | snapshot
2016-08-24 Jim ProcterJAL-2106 convenience method to find all dbsource names... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 tidy / recode MessageManager calls to support... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1854 removed pointless method override commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 removed two redundant (overwritten) setText... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 corrected Message bundle lookup key commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 undo i18n of exception message commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1854 declare immutable class as final commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 recode calls to MessageManager to allow code... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-2151 port fix to applet commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls... commit | commitdiff | tree | snapshot
2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated... commit | commitdiff | tree | snapshot
2016-08-23 gmungocJAL-2176 unused field / methods removed commit | commitdiff | tree | snapshot
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection commit | commitdiff | tree | snapshot
2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for... commit | commitdiff | tree | snapshot
2016-08-22 gmungocJAL-2175 code tidying commit | commitdiff | tree | snapshot
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip commit | commitdiff | tree | snapshot
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test commit | commitdiff | tree | snapshot
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests commit | commitdiff | tree | snapshot
2016-08-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2077 using Platform method to check for Ctrl-down commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1445 status message '...not containing...' for... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1855 fail gracefully if XML has no <sequence> element commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected() commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2146 status message now with formatted residue... commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link... commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2172 handle case where column selection is not... commit | commitdiff | tree | snapshot
2016-08-16 gmungocJAL-2172 unit test added commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2124 i18n of "All" menu item commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation) commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos... commit | commitdiff | tree | snapshot
2016-08-09 Jim ProcterJAL-2154 test for CDS->protein map commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manuall... commit | commitdiff | tree | snapshot
2016-08-08 tcofoegbureplaced broken biojsmsa home link in jalveiw help commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2168 -nonews option also mentioned here commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2168 document '-nonews' parameter commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-2164 add transferred annotation to sequence commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2008 handle fast mouse drag of feature ordering... commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2015 convert Color from colour picker to FeatureColour commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2046 additional logic to suppress spurious implemen... commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'efficiency/JAL-2034_JAL-1421' into develop commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2034 show greyed out image during overview update commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into develop commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make... commit | commitdiff | tree | snapshot
2016-07-29 tcofoegbuJAL-1957 JAL-1479 updated SIFTS user docs commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 disable visual delay only after completed... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 register any new dataset codon frames only... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 only include mappings in dbref/alcodon in... commit | commitdiff | tree | snapshot
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2154 toString for forward references commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterMerge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFro... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2163 set title for the alignframe from restored... patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 resolve and add complementary views for saveAl... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 refactor saveState & saveAlignment to common... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 getter for AlignFrame(s) held in a splitframe commit | commitdiff | tree | snapshot
2016-07-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence... commit | commitdiff | tree | snapshot
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