jalview.git
2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque...
2016-04-29 Jim ProcterJAL-1551 formatting
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no...
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue...
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge
2016-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-04-26 Jim ProcterJAL-2079 update GPL header for new Xfam tests
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment
2016-04-26 Jim ProcterJAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev...
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources
2016-04-26 tcofoegbumerge
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable...
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right...
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling...
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
2016-04-26 Jim ProcterMerge branch 'bug/JAL-2080_javaws_slow_291' into develop
2016-04-26 Jim ProcterJAL-2080 removed all 'Class-Path' references in libs
2016-04-26 Jim ProcterJAL-2080 removed classpath references to Xerces and...
2016-04-26 Jim ProcterJAL-2080 mark jalview.jar as main jar resource
2016-04-26 tcofoegbumerge
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS...
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 changed extension for data column config files
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 resolved fts data column config file path...
2016-04-26 tcofoegbuJAL-2071 House keeping
2016-04-26 tcofoegbuJAL-2074 removed hard-coded groovy lib path in classpath
2016-04-26 tcofoegbuJAL-2071 improvement to reduce webservice requests...
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-25 Jim ProcterJAL-2074 add the groovy 1.8.2 library back to classpath
2016-04-25 tcofoegbudevelop merge
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2
2016-04-25 tcofoegbudevelop merge
2016-04-25 Jim ProcterJAL-2074 groovy-all didn’t get added :q
2016-04-25 Jim ProcterJAL-2074 switch to non-indy groovy to see if class...
2016-04-25 gmungocJAL-2078 fixed broken link to groovy page
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search
2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open...
2016-04-24 Jim ProcterJAL-1551 JAL-2077 formatting
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature...
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG...
2016-04-24 Jim ProcterJAL-2075 make GroovyConsole a singleton so tests requir...
2016-04-23 Jim ProcterJAL-2075 fix: use AlignmentView.getVisibleContigs and...
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test)
2016-04-23 Jim ProcterJAL-2075 formatting
2016-04-22 tcofoegbuJAL-1563 JAL-2071 Update and completed implementation...
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house...
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable...
2016-04-22 gmungocJAL-2068 Javadoc added
2016-04-22 gmungocJAL-2068 redundant implements clauses removed
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
2016-04-21 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-20 Jim ProcterMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
2016-04-20 Jim ProcterJAL-2074 updated URLs and removed 'how to get groovy...
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy
2016-04-20 Jim Procterfix for JAL-2072
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free...
2016-04-18 gmungocJAL-2067 fixed broken link
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib...
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur...
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method...
2016-04-14 gmungocJAL-2049 small refactor of constructors to avoid code...
2016-04-14 gmungocJAL-1421 type parameter added to some collections
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-14 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-14 gmungocJAL-653 test updated for 'use ID for description'
2016-04-14 gmungocJAL-1270 JAL-653 use 'parse immediately' FeaturesFile...
2016-04-14 tcofoegbumerge
2016-04-14 tcofoegbuJAL-1994 Removed redistributed plugin.jar from applet...
2016-04-13 Jim ProcterJAL-2046 fix: patched SeqsetUtils so sequence features...
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken...
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test
2016-04-13 tcofoegbumerge
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions...
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to...
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove...
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ...
2016-04-11 gmungocJAL-1705 code/comment tidy only
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time
2016-04-11 tcofoegbumerge
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
2016-04-11 gmungocJAL-391 help for reverse / complement options
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when...
2016-04-11 tcofoegbumerge
2016-04-11 tcofoegbuRestored auto-deleted file from commit: ad54c1ae5bc1b93...
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to...
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display
2016-04-08 Jim ProcterJAL-2053 JAL-1551 javadoc and simpler code
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo...
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