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jalview.git
2024-03-12 Mateusz WarownyJAL-1601 Update jpred client library. JAL-1601-direct-jpred4-rest-service commit | commitdiff | tree | snapshot
2024-03-12 Mateusz WarownyJAL-1601 Read full file before passing to FileParse commit | commitdiff | tree | snapshot
2024-01-25 Mateusz WarownyJAL-1601 fix phmmer client js library commit | commitdiff | tree | snapshot
2024-01-24 Mateusz WarownyJAL-1601 Add jslibs for hmmer and jpred commit | commitdiff | tree | snapshot
2024-01-23 Mateusz WarownyJAL-1601 Fix broken Alignment Annotation test commit | commitdiff | tree | snapshot
2024-01-19 Mateusz WarownyJAL-1601 Patch JPred4 service tests. commit | commitdiff | tree | snapshot
2023-11-06 Mateusz WarownyJAL-1601 Expand secondary structure prediction tests commit | commitdiff | tree | snapshot
2023-11-06 Mateusz WarownyJAL-1601 Change getSubJobs return type commit | commitdiff | tree | snapshot
2023-11-01 Mateusz WarownyMerge branch 'bug/JAL-4313-make-visible-annot-fix'... commit | commitdiff | tree | snapshot
2023-11-01 Mateusz WarownyJAL-4313 Clamp start and end ranges to array size bug/JAL-4313-make-visible-annot-fix commit | commitdiff | tree | snapshot
2023-10-31 Mateusz WarownyJAL-4313 Test and patch annots trimming commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyMerge branch 'bug/JAL-4313-make-visible-annot-fix'... commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Change default trim end to (length - 1) commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Test makeVisibleAnnotations commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Create Annotation tests commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Patch AnnotationsMatcher to match nulls commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Create utilities to test annotations commit | commitdiff | tree | snapshot
2023-10-19 Mateusz WarownyJAL-1601 Implement sec str pred for single sequences commit | commitdiff | tree | snapshot
2023-10-18 Mateusz WarownyJAL-1601 Reuse existing "getNonEmptySequenceSet" method commit | commitdiff | tree | snapshot
2023-10-18 Mateusz WarownyJAL-1601 Rename task class to SecStructPredMsaTask commit | commitdiff | tree | snapshot
2023-10-18 Mateusz WarownyJAL-1601 Move job class as inner task class commit | commitdiff | tree | snapshot
2023-10-17 Mateusz WarownyJAL-1601 Create alignment copying method in AlignmentUtils commit | commitdiff | tree | snapshot
2023-10-17 Mateusz WarownyJAL-1601 Test alignment submitted to service commit | commitdiff | tree | snapshot
2023-10-16 Mateusz WarownyJAL-1601 Propagate hidden columns to the output alignment commit | commitdiff | tree | snapshot
2023-10-16 Mateusz WarownyJAL-1601 Propagate representative sequence to the final... commit | commitdiff | tree | snapshot
2023-10-13 Mateusz WarownyJAL-1601 Set job status to server error if collecting... commit | commitdiff | tree | snapshot
2023-10-13 Mateusz WarownyJAL-1601 Create SecStructPredTask class commit | commitdiff | tree | snapshot
2023-10-13 Mateusz WarownyJAL-1601 Load and display JPred4 service in AlignFrame commit | commitdiff | tree | snapshot
2023-10-13 Mateusz WarownyJAL-1601 Implement JPred4 WS client and discoverer commit | commitdiff | tree | snapshot
2023-10-05 Mateusz WarownyJAL-1601 Create action and task for sec. str. pred... commit | commitdiff | tree | snapshot
2023-10-05 Mateusz WarownyJAL-1601 Implement JPred4 client and discoverer commit | commitdiff | tree | snapshot
2023-10-05 Mateusz WarownyJAL-1601 Update javadoc of getAlignmentAndHiddenColumns commit | commitdiff | tree | snapshot
2023-10-05 Mateusz WarownyJAL-1601 Add sec str pred provider and client interfaces commit | commitdiff | tree | snapshot
2023-09-25 Mateusz WarownyJAL-1601 Test getVisibleCongigMapFor commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment... commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 Flter empty columns from annotation service... mmw/bug/JAL-4241-annotation-alignment-fix-slivka commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 Add SequenceI.setSequence(char[]) method commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 add SeqsetUtils.filterSequence function commit | commitdiff | tree | snapshot
2023-09-12 Mateusz WarownyJAL-4241 Fix non-standard residues replacement. commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment... commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'improvement/JAL-4245-return-null-from... commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyJAL-4199 Set all setup methods to alwaysRun mmw/JAL-4199-web-services-testing commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyJAL-4199 Add tests to the "Functional" group commit | commitdiff | tree | snapshot
2023-08-04 Mateusz WarownyJAL-4241 Test sequences prepared for annotation job commit | commitdiff | tree | snapshot
2023-07-31 Mateusz WarownyJAL-4241 Fix annotation and feature alignment with... commit | commitdiff | tree | snapshot
2023-07-28 Mateusz WarownyJAL-4241 Create sequence mapping before adjusting annot... commit | commitdiff | tree | snapshot
2023-07-26 Mateusz WarownyJAL-4245 Test getRootDataset method improvement/JAL-4245-return-null-from-getRootDataset commit | commitdiff | tree | snapshot
2023-07-26 Mateusz WarownyJAL-4245 Return null from getRootDataset if no dataset commit | commitdiff | tree | snapshot
2023-07-19 Mateusz WarownyJAL-4199 Add tests to the "Functional" group commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'patch/JAL-4232-disable-unavailable-servic... commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-task-execution-update' into... commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins. patch/JAL-4232-disable-unavailable-services commit | commitdiff | tree | snapshot
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw... mmw/JAL-4199-task-execution-update commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0 commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes... commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot... commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask commit | commitdiff | tree | snapshot
2023-07-04 James ProcterMerge branch 'mmw/Release_2_12_ws_merge' into developme... commit | commitdiff | tree | snapshot
2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests commit | commitdiff | tree | snapshot
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED commit | commitdiff | tree | snapshot
2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction commit | commitdiff | tree | snapshot
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery commit | commitdiff | tree | snapshot
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs feature/JAL-3954-ebi-phmmer commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to... commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status commit | commitdiff | tree | snapshot
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service commit | commitdiff | tree | snapshot
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment... commit | commitdiff | tree | snapshot
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change... commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing... commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message commit | commitdiff | tree | snapshot
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