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jalview.git
2019-02-04 gmungocJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON commit | commitdiff | tree | snapshot
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... commit | commitdiff | tree | snapshot
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC... commit | commitdiff | tree | snapshot
2019-01-29 gmungocJAL-3143 format alleles array for feature description commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename... commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 fixed test commit | commitdiff | tree | snapshot
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label (change of '_' character to... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Eclipse re-formatting of file commit | commitdiff | tree | snapshot
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse commit | commitdiff | tree | snapshot
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc... commit | commitdiff | tree | snapshot
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 Fixed what happens when suffix template has... commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 New message translations commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Rejigged the Preferences tab and changed some... commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 removing diagnostic output commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed... commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'develop' into feature/JAL-3063jaxbNoCastor commit | commitdiff | tree | snapshot
2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation... commit | commitdiff | tree | snapshot
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... commit | commitdiff | tree | snapshot
2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767 commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry! commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item... commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Made more constants commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove duplicate message keys commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 wider dialog so all fields show! commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 tidy up commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-1767 failing test to check if the PCA view associat... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 - ant task for regenerating JAXB schema -... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 language word ending corrections commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review commit | commitdiff | tree | snapshot
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... commit | commitdiff | tree | snapshot
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review commit | commitdiff | tree | snapshot
2019-01-08 gmungocJAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu commit | commitdiff | tree | snapshot
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 additional test for clover-added fields commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco commit | commitdiff | tree | snapshot
2018-12-21 gmungocJAL-1767 minimise local variable scope commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 commit | commitdiff | tree | snapshot
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from... commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-3178 known defect in release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'task/JAL-3174_fixed_filename_tests' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception... commit | commitdiff | tree | snapshot
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2541 JAL-2822 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 bump release 2.11 release to January 2019 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset commit | commitdiff | tree | snapshot
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite commit | commitdiff | tree | snapshot
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite... commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12 commit | commitdiff | tree | snapshot
2018-12-03 gmungocJAL-3063 Castor removed from codebase commit | commitdiff | tree | snapshot
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