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jalview.git
2017-06-30 gmungocJAL-2574 renamed findFeatures as findOverlappingFeature... bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release commit | commitdiff | tree | snapshot
2017-06-30 gmungocMerge branch 'develop' into bug/JAL-2541cutWithFeatures commit | commitdiff | tree | snapshot
2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2600 updates following review commit | commitdiff | tree | snapshot
2017-06-28 gmungocJAL-2541 clean unit test of cut/undo (ungapped sequence) commit | commitdiff | tree | snapshot
2017-06-27 gmungocJAL-2541 more useful assert message commit | commitdiff | tree | snapshot
2017-06-27 gmungocMerge branch 'features/JAL-2446NCList' into bug/JAL... commit | commitdiff | tree | snapshot
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Tidies commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Abandoned fastpaint for resize; now full repai... commit | commitdiff | tree | snapshot
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... commit | commitdiff | tree | snapshot
2017-06-27 gmungocJAL-1858 highlights on wrapped panel - work in progress commit | commitdiff | tree | snapshot
2017-06-27 gmungocJAL-147 scroll wrapped panel by one width's worth at... commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Add in IdCanvas and checks for 0 size images commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 vertical fast paint too commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 fast painting on resize commit | commitdiff | tree | snapshot
2017-06-26 kiramtJAL-2600 reinstate original behaviour commit | commitdiff | tree | snapshot
2017-06-26 gmungocJAL-1858 ensure full redraw on 'remove all selections' commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-2589 unit test updated commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-2547 fix case of gap followed by enclosing contact... commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-1858 null img when doing full repaint of wrapped... commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-1858 don't fastpaint highlights if wrapped format bug/JAL-1858fastPaintHighlights commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-1858 refactored method to redraw previous/new highl... commit | commitdiff | tree | snapshot
2017-06-23 gmungocJAL-1858 handle hidden columns when computing region... commit | commitdiff | tree | snapshot
2017-06-23 gmungocJAL-1858 'fastPaint' of minimal region for highlights... commit | commitdiff | tree | snapshot
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of... commit | commitdiff | tree | snapshot
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures... commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2541 save/Undo only 'diffs' for features with Cut... commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2451 remove unused flag commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2541 adjust end of contact feature spanning cut... commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2480 clarify that findOverlaps excludes spanning... commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2524 don't render up to a hidden marker beyond... commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2541 clearer comments commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2541 length check in deleteChars to avoid index... commit | commitdiff | tree | snapshot
2017-06-20 gmungocMerge branch 'features/JAL-2446NCList' into bug/JAL... commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2526 don't retain lastColumnPosition from an invali... commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2541 working Cut/Undo with feature relocation commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2526 better names for fields commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2480 make fiels of Range private commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2563 test updated for fix commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2541 revised cut with features (work in progress) commit | commitdiff | tree | snapshot
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2418 typos commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop commit | commitdiff | tree | snapshot
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... commit | commitdiff | tree | snapshot
2017-06-13 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split... commit | commitdiff | tree | snapshot
2017-06-12 kiramtJAL-2591 Updates following code review commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros... commit | commitdiff | tree | snapshot
2017-06-11 Jim ProcterJAL-2418 updated release branch/version and release... commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped... commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2480 tidy javadoc commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 correct boundary conditions for sequence left... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 made redraw volatile commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 cache first/last residue column positions... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 setStatusMessage avoid redundant findPosition... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 reuse findIndex result if start==end commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... commit | commitdiff | tree | snapshot
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Overview changes ported to applet commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols commit | commitdiff | tree | snapshot
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which... commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2526 less stringent test for invalid cursor commit | commitdiff | tree | snapshot
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2576 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2505 comments updated commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2505 explicit (and final) contactFeature property commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2526sequenceCursor' into commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance commit | commitdiff | tree | snapshot
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