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jalview.git
2017-05-09 kiramtJAL-2491 Tidies and more refactoring commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2465 fix to dynamically specify data source type... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-1632 correct i18n and NPE commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... commit | commitdiff | tree | snapshot
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 More wrap corrections commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... commit | commitdiff | tree | snapshot
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff | tree | snapshot
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-05-05 tcofoegbuJAL-2484 adjusted default cache settings panel's left... commit | commitdiff | tree | snapshot
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuJAL-1648 improvements: enter key closes the popup and... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 Tidies commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 Wrapped panel scrolling commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 test a Uniprot fetch commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 simplify code commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-1933 Spanish for Occupancy commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 fixme’s removed commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d) commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 inlined two 1-line methods commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff | tree | snapshot
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-02 kiramtJAL-2491 first addition of new event commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 bug fix commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix commit | commitdiff | tree | snapshot
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuResolve properties file merge conflict with develop commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' into spikes/phyre commit | commitdiff | tree | snapshot
2017-05-01 tcofoegburesolved merge conflict commit | commitdiff | tree | snapshot
2017-05-01 tcofoegburesolve merge conflict in SiftsClientTest commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbumerge develop commit | commitdiff | tree | snapshot
2017-05-01 gmungocMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch commit | commitdiff | tree | snapshot
2017-05-01 gmungocJAL-2434 omit unmapped positions from mapping commit | commitdiff | tree | snapshot
2017-04-28 gmungocJAL-2495 highlight all mapped sequences from structure... commit | commitdiff | tree | snapshot
2017-04-28 gmungocJAL-2434 check all sequences when determining superposa... commit | commitdiff | tree | snapshot
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-28 gmungocJAL-2434 use a constant for StructureMapping.NO_CHAIN... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy commit | commitdiff | tree | snapshot
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