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jalview.git
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel commit | commitdiff | tree | snapshot
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures commit | commitdiff | tree | snapshot
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... commit | commitdiff | tree | snapshot
2017-05-25 kiramtJAl-2034 Ported to applet bug/JAL-2034contextchange commit | commitdiff | tree | snapshot
2017-05-25 kiramtJAL-2034 don't update overview after click without... commit | commitdiff | tree | snapshot
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... commit | commitdiff | tree | snapshot
2017-05-25 gmungocJAL-2505 simplifying number of SequenceFeature construc... commit | commitdiff | tree | snapshot
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... commit | commitdiff | tree | snapshot
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... commit | commitdiff | tree | snapshot
2017-05-25 kiramtMerge branch 'bug/JAL-2551' into bug/JAL-2034contextchange commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature... commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to... commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters commit | commitdiff | tree | snapshot
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature... commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for... commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup commit | commitdiff | tree | snapshot
2017-05-24 gmungocJAL-2505 delete and readd modified feature after Cut... commit | commitdiff | tree | snapshot
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 commit | commitdiff | tree | snapshot
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves... commit | commitdiff | tree | snapshot
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact... commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap bug/JAL-2547tooltipOnGap commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature... commit | commitdiff | tree | snapshot
2017-05-23 gmungocJAL-2480 methods to get features for group commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2505 updates after conflicting merge of JAL-2504 commit | commitdiff | tree | snapshot
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures commit | commitdiff | tree | snapshot
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2544 check feature overlaps selection region commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2543 identify as JSON before HTML commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior... commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2480 always include all non-positional features... commit | commitdiff | tree | snapshot
2017-05-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2256'... commit | commitdiff | tree | snapshot
2017-05-22 Jim ProcterJAL-2418 patch build - broken htsjdk import commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition() commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures' commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2544 only include features in selected columns... commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2490 only count sequences where feature overlap... commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterMerge branch 'bug/JAL-2388_typeCheckAlignView.getUpdate... commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible... commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass" commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2490 lookup features at each column position commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature descri... commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2490 retrieve visible features only commit | commitdiff | tree | snapshot
2017-05-18 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);... commit | commitdiff | tree | snapshot
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterJAL-2418 remove explicit test suite stats commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 add links to issues.jalview.org for experiment... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 experimental section in ‘Whats New’ commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 JAL-2295 JAL-2296 documenting as experimental... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature... commit | commitdiff | tree | snapshot
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 documentation on custom colours groovy examples commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2536 Overview window sizing not subject to min... bug/JAL-2536 commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 refactored method removed commit | commitdiff | tree | snapshot
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 JAL-2316 added to new features commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2316 tweaking docs and links in help commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2517 restore complex colour scheme on Cancel in... bug/JAL-2517cancelAppletColour commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release 2.10.2 release notes template commit | commitdiff | tree | snapshot
2017-05-16 Jim Procteralternative patch for JAL-2339 readability in java... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of... commit | commitdiff | tree | snapshot
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2522 Missed fix to applet commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring commit | commitdiff | tree | snapshot
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2491 Better merge commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
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