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jalview.git
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun commit | commitdiff | tree | snapshot
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' of source... commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-2906 small tweaks to release notes commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2906 2.10.4 release for 8th May 2018 commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2906 removed mention of experimental features,... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2929 JAL-2922 release notes commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 typo in installAnywhere build for VAqua dependency commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2960 release notes commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 Vaqua fallback release notes JAL-2906 commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... commit | commitdiff | tree | snapshot
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... commit | commitdiff | tree | snapshot
2018-05-02 Jim ProcterJAL-2976 Vaqua(4) as a dependency commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2899 release notes commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)
 commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2925 release notes commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2906 reformat release notes commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2906 typo commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2944 revised docs and structure chooser screen... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou... commit | commitdiff | tree | snapshot
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff | tree | snapshot
2018-04-30 Jim ProcterJAL-2906 release 2.10.4 on 1st May 2018 commit | commitdiff | tree | snapshot
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-2939 exit calc thread if no HMM in alignment commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-591 use constant for Preferences key commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-2616 unused field removed commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-2956 unit test commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2956 save/restore HMMER profile to/from Jalview... commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn... commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only commit | commitdiff | tree | snapshot
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max... commit | commitdiff | tree | snapshot
2018-04-20 gmungocJAL-591 tidy and comment code commit | commitdiff | tree | snapshot
2018-04-20 gmungocJAL-2629 tweaks to text commit | commitdiff | tree | snapshot
2018-04-20 gmungocJAL-591 OptionBox FlowLayout, tweaks to wrapping of... commit | commitdiff | tree | snapshot
2018-04-19 gmungocJAL-591 utility method renamed and slightly generalised commit | commitdiff | tree | snapshot
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... commit | commitdiff | tree | snapshot
2018-04-18 gmungocJAL-2629 corrected cutoff parameter passing to hmmsearch commit | commitdiff | tree | snapshot
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi... commit | commitdiff | tree | snapshot
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... commit | commitdiff | tree | snapshot
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild... commit | commitdiff | tree | snapshot
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe... commit | commitdiff | tree | snapshot
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some... commit | commitdiff | tree | snapshot
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-1847 minor post-review updates commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-2944 tidies for review comments commit | commitdiff | tree | snapshot
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions... commit | commitdiff | tree | snapshot
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring commit | commitdiff | tree | snapshot
2018-04-09 Mungo CarstairsJAL-2629 more error checking commit | commitdiff | tree | snapshot
2018-04-09 Mungo CarstairsJAL-2937 extract reusable utility method commit | commitdiff | tree | snapshot
2018-04-09 Mungo CarstairsJAL-2069 typo commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... commit | commitdiff | tree | snapshot
2018-04-06 Jim Procterfailing test for JAL-2223 commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 formatting commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 combo box to pick which viewer to load structu... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString() commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2599 MapList from HMM nodes to consensus dataset... commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 tidy code, factory methods for param sets commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 use correct gap character, revised deletion... commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 Javadoc updates commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 combine with/without defaults in one method... commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2939 field/method naming more consistent commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 ensure hmm consensus sequence set on alignment... commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2941 'map hmm to RF' removed pending clarifications commit | commitdiff | tree | snapshot
2018-03-30 gmungocsmall tidy commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2938 revisions to implementation details commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2939 remove commented out code commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2599 move utility method to MappingUtils commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2939 simplified way of getting hmm consensus residue commit | commitdiff | tree | snapshot
2018-03-30 gmungocJAL-2629 add title to output alignment window commit | commitdiff | tree | snapshot
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