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jalview.git
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12 commit | commitdiff | tree | snapshot
2018-12-03 gmungocJAL-3063 Castor removed from codebase commit | commitdiff | tree | snapshot
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2018-11-20 Ben Soares.gitignore changes commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second... commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough... commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... commit | commitdiff | tree | snapshot
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... commit | commitdiff | tree | snapshot
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... commit | commitdiff | tree | snapshot
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... commit | commitdiff | tree | snapshot
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-23 Ben SoaresBackupFilter and other unfinished business commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Tidying commit | commitdiff | tree | snapshot
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin... commit | commitdiff | tree | snapshot
2018-09-24 gmungocJAL-3063 tidy commented out code commit | commitdiff | tree | snapshot
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 tweaks to help text for filters commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... commit | commitdiff | tree | snapshot
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 top level element added to colours schema... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 New View via JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume... commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 test method renamed to match code commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB commit | commitdiff | tree | snapshot
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff | tree | snapshot
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 gmungocJAL-1551 reinstated Save actions commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5 commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3106 use .jvp as default commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104 commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update whats new! commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update Java 10 known issues/workarounds in... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 known defect in whats new for Java 10 issues... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 add Ben Soares to authors list and switch... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release notes for updated memory settings commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release notes commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3101 increase default heap size in IA and JNLP... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-2988 update InstallAnywhere install dependencies... patch/VAqua_saveload_update_JAL-2988 commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3076ensemblGeneId' into develop commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release date set for Thursday 6th September commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings commit | commitdiff | tree | snapshot
2018-09-04 Jim ProcterJAL-3091 JAL-2988 release notes re Java 10 and OSX commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 release notes and whats new ! commit | commitdiff | tree | snapshot
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_... commit | commitdiff | tree | snapshot
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3065 release notes commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3087 release notes commit | commitdiff | tree | snapshot
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