Start merging of Laurens Code
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8500 AlignedCodonFrame.java
-rwxr-xr-x 27611 Alignment.java
-rwxr-xr-x 21753 AlignmentAnnotation.java
-rwxr-xr-x 11490 AlignmentI.java
-rwxr-xr-x 7359 AlignmentOrder.java
-rw-r--r-- 36495 AlignmentView.java
-rwxr-xr-x 2955 Annotation.java
-rwxr-xr-x 5297 BinaryNode.java
-rwxr-xr-x 3327 BinarySequence.java
-rw-r--r-- 11048 CigarArray.java
-rw-r--r-- 19809 CigarBase.java
-rw-r--r-- 1714 CigarCigar.java
-rw-r--r-- 1397 CigarSimple.java
-rw-r--r-- 31077 ColumnSelection.java
-rwxr-xr-x 4305 DBRefEntry.java
-rwxr-xr-x 3559 DBRefSource.java
-rw-r--r-- 1588 FeatureProperties.java
-rwxr-xr-x 1442 GraphLine.java
-rwxr-xr-x 6269 HiddenSequences.java
-rw-r--r-- 10410 Mapping.java
-rw-r--r-- 955 NodeTransformI.java
-rwxr-xr-x 2481 PDBEntry.java
-rwxr-xr-x 1377 Provenance.java
-rwxr-xr-x 1287 ProvenanceEntry.java
-rwxr-xr-x 4726 SearchResults.java
-rw-r--r-- 22481 SeqCigar.java
-rwxr-xr-x 25595 Sequence.java
-rwxr-xr-x 5852 SequenceFeature.java
-rwxr-xr-x 25850 SequenceGroup.java
-rwxr-xr-x 8008 SequenceI.java
-rwxr-xr-x 3991 SequenceNode.java
-rwxr-xr-x 1433 SequencePoint.java
-rwxr-xr-x 1857 UniprotEntry.java
-rwxr-xr-x 1055 UniprotFile.java
-rwxr-xr-x 1141 UniprotProteinName.java
-rwxr-xr-x 1281 UniprotSequence.java
drwxr-xr-x - xdb