source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	284	.cvsignore	blob \| history \| raw
-rw-r--r--	8000	AlignExportOptions.java	blob \| history \| raw
-rw-r--r--	169309	AlignFrame.java	blob \| history \| raw
-rw-r--r--	30148	AlignViewport.java	blob \| history \| raw
-rw-r--r--	50787	AlignmentPanel.java	blob \| history \| raw
-rw-r--r--	18588	AnnotationChooser.java	blob \| history \| raw
-rw-r--r--	13786	AnnotationColourChooser.java	blob \| history \| raw
-rw-r--r--	24561	AnnotationColumnChooser.java	blob \| history \| raw
-rw-r--r--	9986	AnnotationExporter.java	blob \| history \| raw
-rwxr-xr-x	35891	AnnotationLabels.java	blob \| history \| raw
-rwxr-xr-x	31968	AnnotationPanel.java	blob \| history \| raw
-rw-r--r--	12858	AnnotationRowFilter.java	blob \| history \| raw
-rw-r--r--	19442	AppJmol.java	blob \| history \| raw
-rw-r--r--	5235	AppJmolBinding.java	blob \| history \| raw
-rw-r--r--	19488	AppVarna.java	blob \| history \| raw
-rw-r--r--	14138	AppVarnaBinding.java	blob \| history \| raw
-rw-r--r--	7086	AquaInternalFrameManager.java	blob \| history \| raw
-rw-r--r--	2788	AssociatePdbFileWithSeq.java	blob \| history \| raw
-rw-r--r--	23283	BlogReader.java	blob \| history \| raw
-rw-r--r--	17400	CalculationChooser.java	blob \| history \| raw
-rw-r--r--	23040	ChimeraViewFrame.java	blob \| history \| raw
-rw-r--r--	10121	ColourMenuHelper.java	blob \| history \| raw
-rw-r--r--	1871	ComboBoxTooltipRenderer.java	blob \| history \| raw
-rw-r--r--	17222	Console.java	blob \| history \| raw
-rw-r--r--	16830	CrossRefAction.java	blob \| history \| raw
-rw-r--r--	6263	CutAndPasteHtmlTransfer.java	blob \| history \| raw
-rw-r--r--	10876	CutAndPasteTransfer.java	blob \| history \| raw
-rw-r--r--	107600	Desktop.java	blob \| history \| raw
-rw-r--r--	3538	EditNameDialog.java	blob \| history \| raw
-rw-r--r--	21049	FeatureEditor.java	blob \| history \| raw
-rw-r--r--	1552	FeatureRenderer.java	blob \| history \| raw
-rw-r--r--	56026	FeatureSettings.java	blob \| history \| raw
-rw-r--r--	50320	FeatureTypeSettings.java	blob \| history \| raw
-rwxr-xr-x	10878	Finder.java	blob \| history \| raw
-rwxr-xr-x	11954	FontChooser.java	blob \| history \| raw
-rw-r--r--	2770	Help.java	blob \| history \| raw
-rw-r--r--	1795	IProgressIndicator.java	blob \| history \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| history \| raw
-rwxr-xr-x	14084	IdCanvas.java	blob \| history \| raw
-rwxr-xr-x	14600	IdPanel.java	blob \| history \| raw
-rwxr-xr-x	3875	IdwidthAdjuster.java	blob \| history \| raw
-rw-r--r--	6714	ImageExporter.java	blob \| history \| raw
-rw-r--r--	14420	JDatabaseTree.java	blob \| history \| raw
-rw-r--r--	186860	Jalview2XML.java	blob \| history \| raw
-rwxr-xr-x	15677	Jalview2XML_V1.java	blob \| history \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| history \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| history \| raw
-rw-r--r--	3626	JalviewChimeraBindingModel.java	blob \| history \| raw
-rw-r--r--	2226	JalviewColourChooser.java	blob \| history \| raw
-rw-r--r--	3729	JalviewDialog.java	blob \| history \| raw
-rw-r--r--	21205	JvOptionPane.java	blob \| history \| raw
-rw-r--r--	10771	JvSwingUtils.java	blob \| history \| raw
-rw-r--r--	5939	LineartOptions.java	blob \| history \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| history \| raw
-rw-r--r--	2575	OOMWarning.java	blob \| history \| raw
-rw-r--r--	24077	OptsAndParamsPage.java	blob \| history \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| history \| raw
-rw-r--r--	7568	OverviewCanvas.java	blob \| history \| raw
-rwxr-xr-x	11750	OverviewPanel.java	blob \| history \| raw
-rw-r--r--	21036	PCAPanel.java	blob \| history \| raw
-rwxr-xr-x	6083	PaintRefresher.java	blob \| history \| raw
-rwxr-xr-x	5237	PairwiseAlignPanel.java	blob \| history \| raw
-rw-r--r--	63697	PopupMenu.java	blob \| history \| raw
-rwxr-xr-x	43293	Preferences.java	blob \| history \| raw
-rw-r--r--	7324	ProgressBar.java	blob \| history \| raw
-rw-r--r--	4442	ProgressPanel.java	blob \| history \| raw
-rw-r--r--	6109	PromptUserConfig.java	blob \| history \| raw
-rwxr-xr-x	7703	RedundancyPanel.java	blob \| history \| raw
-rw-r--r--	7630	RestInputParamEditDialog.java	blob \| history \| raw
-rw-r--r--	15515	RestServiceEditorPane.java	blob \| history \| raw
-rwxr-xr-x	17509	RotatableCanvas.java	blob \| history \| raw
-rwxr-xr-x	15073	ScalePanel.java	blob \| history \| raw
-rwxr-xr-x	66331	SeqCanvas.java	blob \| history \| raw
-rw-r--r--	61657	SeqPanel.java	blob \| history \| raw
-rwxr-xr-x	30563	SequenceFetcher.java	blob \| history \| raw
-rwxr-xr-x	13958	SequenceRenderer.java	blob \| history \| raw
-rwxr-xr-x	12027	SliderPanel.java	blob \| history \| raw
-rwxr-xr-x	10322	SplashScreen.java	blob \| history \| raw
-rw-r--r--	23739	SplitFrame.java	blob \| history \| raw
-rw-r--r--	42529	StructureChooser.java	blob \| history \| raw
-rw-r--r--	10388	StructureViewer.java	blob \| history \| raw
-rw-r--r--	27595	StructureViewerBase.java	blob \| history \| raw
-rw-r--r--	8527	TextColourChooser.java	blob \| history \| raw
-rwxr-xr-x	26903	TreeCanvas.java	blob \| history \| raw
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-rwxr-xr-x	25704	UserDefinedColours.java	blob \| history \| raw
-rw-r--r--	5195	UserQuestionnaireCheck.java	blob \| history \| raw
-rw-r--r--	35300	VamsasApplication.java	blob \| history \| raw
-rw-r--r--	8153	ViewSelectionMenu.java	blob \| history \| raw
-rw-r--r--	22202	WebserviceInfo.java	blob \| history \| raw
-rw-r--r--	43554	WsJobParameters.java	blob \| history \| raw
-rw-r--r--	9783	WsParamSetManager.java	blob \| history \| raw
-rw-r--r--	17311	WsPreferences.java	blob \| history \| raw