source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	284	.cvsignore	blob \| history \| raw
-rw-r--r--	8000	AlignExportOptions.java	blob \| history \| raw
-rw-r--r--	169083	AlignFrame.java	blob \| history \| raw
-rw-r--r--	30290	AlignViewport.java	blob \| history \| raw
-rw-r--r--	48291	AlignmentPanel.java	blob \| history \| raw
-rw-r--r--	18588	AnnotationChooser.java	blob \| history \| raw
-rw-r--r--	13786	AnnotationColourChooser.java	blob \| history \| raw
-rw-r--r--	24797	AnnotationColumnChooser.java	blob \| history \| raw
-rw-r--r--	9986	AnnotationExporter.java	blob \| history \| raw
-rwxr-xr-x	35891	AnnotationLabels.java	blob \| history \| raw
-rwxr-xr-x	33528	AnnotationPanel.java	blob \| history \| raw
-rw-r--r--	12858	AnnotationRowFilter.java	blob \| history \| raw
-rw-r--r--	19550	AppJmol.java	blob \| history \| raw
-rw-r--r--	5264	AppJmolBinding.java	blob \| history \| raw
-rw-r--r--	20079	AppVarna.java	blob \| history \| raw
-rw-r--r--	14138	AppVarnaBinding.java	blob \| history \| raw
-rw-r--r--	7096	AquaInternalFrameManager.java	blob \| history \| raw
-rw-r--r--	2788	AssociatePdbFileWithSeq.java	blob \| history \| raw
-rw-r--r--	23283	BlogReader.java	blob \| history \| raw
-rw-r--r--	17410	CalculationChooser.java	blob \| history \| raw
-rw-r--r--	23040	ChimeraViewFrame.java	blob \| history \| raw
-rw-r--r--	10100	ColourMenuHelper.java	blob \| history \| raw
-rw-r--r--	1871	ComboBoxTooltipRenderer.java	blob \| history \| raw
-rw-r--r--	17222	Console.java	blob \| history \| raw
-rw-r--r--	16830	CrossRefAction.java	blob \| history \| raw
-rw-r--r--	6263	CutAndPasteHtmlTransfer.java	blob \| history \| raw
-rw-r--r--	10868	CutAndPasteTransfer.java	blob \| history \| raw
-rw-r--r--	106159	Desktop.java	blob \| history \| raw
-rw-r--r--	3538	EditNameDialog.java	blob \| history \| raw
-rw-r--r--	21049	FeatureEditor.java	blob \| history \| raw
-rw-r--r--	1552	FeatureRenderer.java	blob \| history \| raw
-rw-r--r--	57032	FeatureSettings.java	blob \| history \| raw
-rw-r--r--	50320	FeatureTypeSettings.java	blob \| history \| raw
-rwxr-xr-x	10776	Finder.java	blob \| history \| raw
-rwxr-xr-x	12046	FontChooser.java	blob \| history \| raw
-rw-r--r--	2770	Help.java	blob \| history \| raw
-rw-r--r--	1795	IProgressIndicator.java	blob \| history \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| history \| raw
-rwxr-xr-x	15432	IdCanvas.java	blob \| history \| raw
-rwxr-xr-x	14600	IdPanel.java	blob \| history \| raw
-rwxr-xr-x	3875	IdwidthAdjuster.java	blob \| history \| raw
-rw-r--r--	6857	ImageExporter.java	blob \| history \| raw
-rw-r--r--	14420	JDatabaseTree.java	blob \| history \| raw
-rw-r--r--	186941	Jalview2XML.java	blob \| history \| raw
-rwxr-xr-x	15684	Jalview2XML_V1.java	blob \| history \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| history \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| history \| raw
-rw-r--r--	3626	JalviewChimeraBindingModel.java	blob \| history \| raw
-rw-r--r--	2226	JalviewColourChooser.java	blob \| history \| raw
-rw-r--r--	3729	JalviewDialog.java	blob \| history \| raw
-rw-r--r--	21205	JvOptionPane.java	blob \| history \| raw
-rw-r--r--	10771	JvSwingUtils.java	blob \| history \| raw
-rw-r--r--	5939	LineartOptions.java	blob \| history \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| history \| raw
-rw-r--r--	2575	OOMWarning.java	blob \| history \| raw
-rw-r--r--	24077	OptsAndParamsPage.java	blob \| history \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| history \| raw
-rw-r--r--	7568	OverviewCanvas.java	blob \| history \| raw
-rwxr-xr-x	11750	OverviewPanel.java	blob \| history \| raw
-rw-r--r--	21041	PCAPanel.java	blob \| history \| raw
-rwxr-xr-x	6083	PaintRefresher.java	blob \| history \| raw
-rwxr-xr-x	5237	PairwiseAlignPanel.java	blob \| history \| raw
-rw-r--r--	64378	PopupMenu.java	blob \| history \| raw
-rwxr-xr-x	43522	Preferences.java	blob \| history \| raw
-rw-r--r--	7324	ProgressBar.java	blob \| history \| raw
-rw-r--r--	4442	ProgressPanel.java	blob \| history \| raw
-rw-r--r--	6109	PromptUserConfig.java	blob \| history \| raw
-rwxr-xr-x	7714	RedundancyPanel.java	blob \| history \| raw
-rw-r--r--	7630	RestInputParamEditDialog.java	blob \| history \| raw
-rw-r--r--	15515	RestServiceEditorPane.java	blob \| history \| raw
-rwxr-xr-x	17509	RotatableCanvas.java	blob \| history \| raw
-rwxr-xr-x	15073	ScalePanel.java	blob \| history \| raw
-rwxr-xr-x	62384	SeqCanvas.java	blob \| history \| raw
-rw-r--r--	61641	SeqPanel.java	blob \| history \| raw
-rwxr-xr-x	30555	SequenceFetcher.java	blob \| history \| raw
-rwxr-xr-x	13958	SequenceRenderer.java	blob \| history \| raw
-rwxr-xr-x	12123	SliderPanel.java	blob \| history \| raw
-rwxr-xr-x	10322	SplashScreen.java	blob \| history \| raw
-rw-r--r--	23746	SplitFrame.java	blob \| history \| raw
-rw-r--r--	42529	StructureChooser.java	blob \| history \| raw
-rw-r--r--	10388	StructureViewer.java	blob \| history \| raw
-rw-r--r--	27595	StructureViewerBase.java	blob \| history \| raw
-rw-r--r--	8527	TextColourChooser.java	blob \| history \| raw
-rwxr-xr-x	27579	TreeCanvas.java	blob \| history \| raw
-rwxr-xr-x	22050	TreePanel.java	blob \| history \| raw
-rwxr-xr-x	26110	UserDefinedColours.java	blob \| history \| raw
-rw-r--r--	5195	UserQuestionnaireCheck.java	blob \| history \| raw
-rw-r--r--	35310	VamsasApplication.java	blob \| history \| raw
-rw-r--r--	8153	ViewSelectionMenu.java	blob \| history \| raw
-rw-r--r--	22202	WebserviceInfo.java	blob \| history \| raw
-rw-r--r--	43554	WsJobParameters.java	blob \| history \| raw
-rw-r--r--	10437	WsParamSetManager.java	blob \| history \| raw
-rw-r--r--	17311	WsPreferences.java	blob \| history \| raw