source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	42	.cvsignore	blob \| history \| raw
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	9850	AlignFile.java	blob \| history \| raw
-rw-r--r--	586	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	536	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	52018	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	18130	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6272	BLCFile.java	blob \| history \| raw
-rw-r--r--	8719	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6601	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	85	DataSourceType.java	blob \| history \| raw
-rwxr-xr-x	5072	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	33212	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	8880	FileFormat.java	blob \| history \| raw
-rw-r--r--	174	FileFormatException.java	blob \| history \| raw
-rw-r--r--	1578	FileFormatI.java	blob \| history \| raw
-rw-r--r--	4070	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	16775	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	15572	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8150	FormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	10825	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12050	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	12348	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1610	InputStreamParser.java	blob \| history \| raw
-rwxr-xr-x	11815	JPredFile.java	blob \| history \| raw
-rw-r--r--	29744	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	10864	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4046	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	3802	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8677	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9543	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10349	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	27442	NewickFile.java	blob \| history \| raw
-rw-r--r--	2272	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5064	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4415	PfamFile.java	blob \| history \| raw
-rw-r--r--	9375	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4449	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6752	RnamlFile.java	blob \| history \| raw
-rw-r--r--	11590	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	13373	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8775	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	37926	StockholmFile.java	blob \| history \| raw
-rw-r--r--	12821	StructureFile.java	blob \| history \| raw
-rw-r--r--	17411	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93354	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8218	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history