source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	10084	AlignFile.java	blob \| history \| raw
-rw-r--r--	1451	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	1401	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	52059	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	18312	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6217	BLCFile.java	blob \| history \| raw
-rw-r--r--	1837	BackupFilenameFilter.java	blob \| history \| raw
-rw-r--r--	5221	BackupFilenameParts.java	blob \| history \| raw
-rw-r--r--	31369	BackupFiles.java	blob \| history \| raw
-rw-r--r--	6255	BackupFilesPresetEntry.java	blob \| history \| raw
-rw-r--r--	8716	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6661	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	950	DataSourceType.java	blob \| history \| raw
-rw-r--r--	25271	EmblFlatFile.java	blob \| history \| raw
-rwxr-xr-x	5072	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	44269	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	9746	FileFormat.java	blob \| history \| raw
-rw-r--r--	1039	FileFormatException.java	blob \| history \| raw
-rw-r--r--	2443	FileFormatI.java	blob \| history \| raw
-rw-r--r--	4993	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	18508	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	18701	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8211	FormatAdapter.java	blob \| history \| raw
-rw-r--r--	10647	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12424	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	12391	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1503	InputStreamParser.java	blob \| history \| raw
-rw-r--r--	1127	IntKeyStringValueEntry.java	blob \| history \| raw
-rwxr-xr-x	11746	JPredFile.java	blob \| history \| raw
-rw-r--r--	29508	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	15833	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4802	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	4528	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8514	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9547	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10359	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	27525	NewickFile.java	blob \| history \| raw
-rw-r--r--	2213	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5064	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4360	PfamFile.java	blob \| history \| raw
-rw-r--r--	9329	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4406	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6765	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12501	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	17303	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8803	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	40383	StockholmFile.java	blob \| history \| raw
-rw-r--r--	13129	StructureFile.java	blob \| history \| raw
-rw-r--r--	17415	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93726	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8222	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	cache	tree \| history
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history
drwxr-xr-x	-	vcf	tree \| history