binaries/src/ViennaRNA/doc/html/energy__const_8h_source.html

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  65 <div class="title">energy_const.h</div>  </div>
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  67 <div class="contents">
  68 <a href="energy__const_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span></div>
  69 <div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__</span></div>
  70 <div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor"></span></div>
  71 <div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;limits.h&gt;</span></div>
  72 <div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;</div>
  73 <div class="line"><a name="l00012"></a><span class="lineno"><a class="code" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">   12</a></span>&#160;<span class="preprocessor">#define GASCONST 1.98717  </span><span class="comment">/* in [cal/K] */</span><span class="preprocessor"></span></div>
  74 <div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor"></span></div>
  75 <div class="line"><a name="l00014"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">   14</a></span>&#160;<span class="preprocessor">#define K0  273.15</span></div>
  76 <div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor"></span></div>
  77 <div class="line"><a name="l00016"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">   16</a></span>&#160;<span class="preprocessor">#define INF 10000000 </span><span class="comment">/* (INT_MAX/10) */</span><span class="preprocessor"></span></div>
  78 <div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor"></span></div>
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  81 <div class="line"><a name="l00020"></a><span class="lineno"><a class="code" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">   20</a></span>&#160;<span class="preprocessor">#define FORBIDDEN 9999</span></div>
  82 <div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="preprocessor"></span></div>
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  87 <div class="line"><a name="l00026"></a><span class="lineno"><a class="code" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96">   26</a></span>&#160;<span class="preprocessor">#define TURN 3</span></div>
  88 <div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor"></span></div>
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  90 <div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor"></span></div>
  91 <div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="preprocessor">#define   VRNA_GQUAD_MISMATCH_PENALTY   300   </span><span class="comment">/* penalty for incompatible nucleotides in an alignment that destruct a gquad layer */</span><span class="preprocessor"></span></div>
  92 <div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define   VRNA_GQUAD_MISMATCH_NUM_ALI   1   </span><span class="comment">/* maximum number of mismatching sequences in the alignment when gquad should be formed */</span><span class="preprocessor"></span></div>
  93 <div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor"></span></div>
  94 <div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">#endif</span></div>
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