WSTester updated to work plus hopefully all the other changes that need to go into...
authorDaniel Barton <daluke.barton@gmail.com>
Thu, 22 Aug 2013 17:03:17 +0000 (18:03 +0100)
committerDaniel Barton <daluke.barton@gmail.com>
Thu, 22 Aug 2013 17:03:17 +0000 (18:03 +0100)
commit7522ace91fc0804a9719dbac9f68bc8154da3132
tree987966a6ff5f1c4b1a8fa9192fadb6ccf155127a
parent8116c0444fe98e8eb21bcdd8ded06e1429085823
WSTester updated to work plus hopefully all the other changes that need to go into the remote.
1310 files changed:
.gitignore
.project
WEB-INF/sun-jaxws.xml
WEB-INF/web.xml
binaries/src/ViennaRNA/AUTHORS [new file with mode: 0644]
binaries/src/ViennaRNA/COPYING [new file with mode: 0644]
binaries/src/ViennaRNA/ChangeLog [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/AD_main.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/AS_main.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/AnalyseDists.1 [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/AnalyseSeqs.1 [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/PS3D.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/PS3D.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/StrEdit_CostMatrix.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/cluster.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/cluster.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/distance_matrix.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/distance_matrix.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/split.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/split.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/statgeom.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/statgeom.h [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/treeplot.c [new file with mode: 0644]
binaries/src/ViennaRNA/Cluster/treeplot.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/2Dfold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/2Dpfold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/LPfold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/Lfold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/MEA.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/H/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/H/PKplex.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/PS_dot.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/ProfileAln.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/RNAstruct.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/ali_plex.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/alifold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/aln_util.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/cofold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/convert_epars.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/data_structures.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/dist_vars.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/duplex.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/edit_cost.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/energy_const.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/energy_par.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/findpath.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/fold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/fold_vars.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/gquad.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/inverse.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/loop_energies.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/mm.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/move_set.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/naview.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/pair_mat.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/params.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/part_func.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/part_func_co.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/part_func_up.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/plex.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/plot_layouts.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/profiledist.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/read_epars.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/ribo.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/snofold.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/snoop.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/stringdist.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/subopt.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/svm_utils.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/treedist.h [new file with mode: 0644]
binaries/src/ViennaRNA/H/utils.h [new file with mode: 0644]
binaries/src/ViennaRNA/INSTALL [new file with mode: 0644]
binaries/src/ViennaRNA/INSTALL.configure [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/AUTHORS [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/COPYING [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/ChangeLog [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/README [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/hpin.ae.log [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/hpin.e.log [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/hpin.in [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/hpin.log [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/hpin.nolp.log [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/traj [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/traj.ae [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/traj.e [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Example/traj.nolp [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/INSTALL [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Kinfold.1 [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/README [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/extract_data.pl [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/laplace.sh [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/seq1 [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/seq1_ref.ps [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Laplace/to_boxplot.R [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/NEWS [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/README [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/acinclude.m4 [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/aclocal.m4 [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/baum.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/baum.h [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/cache.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/cache_util.h [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/cmdline.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/cmdline.h [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/config.h.in [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/configure [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/configure.ac [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/globals.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/globals.h [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/kinfold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/main.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/nachbar.c [new file with mode: 0644]
binaries/src/ViennaRNA/Kinfold/nachbar.h [new file with mode: 0644]
binaries/src/ViennaRNA/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/NEWS [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNA2Dfold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNA2Dfold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNA2Dfold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNA2Dfold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALalifold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALalifold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALalifold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALalifold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALfold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALfold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALfold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNALfold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAPKplex.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAPKplex.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAPKplex_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAPKplex_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAaliduplex.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAaliduplex.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAaliduplex_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAaliduplex_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAalifold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAalifold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAalifold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAalifold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAcofold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAcofold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAcofold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAcofold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAdistance.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAdistance.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAdistance_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAdistance_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAduplex.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAduplex.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAduplex_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAduplex_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAeval.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAeval.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAeval_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAeval_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAfold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAfold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAfold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAfold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAheat.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAheat.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAheat_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAheat_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAinverse.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAinverse.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAinverse_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAinverse_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApaln.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApaln.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApaln_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApaln_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAparconv.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAparconv.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAparconv_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAparconv_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApdist.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApdist.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApdist_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNApdist_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplex.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplex.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplex_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplex_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplfold.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplfold.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplfold_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplfold_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplot.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplot.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplot_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAplot_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsnoop.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsnoop.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsnoop_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsnoop_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsubopt.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsubopt.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsubopt_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAsubopt_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAup.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAup.ggo [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAup_cmdl.c [new file with mode: 0644]
binaries/src/ViennaRNA/Progs/RNAup_cmdl.h [new file with mode: 0644]
binaries/src/ViennaRNA/README [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/AUTHORS [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/COPYING [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/ChangeLog [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/INSTALL [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/NEWS [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/README [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/TODO [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/aclocal.m4 [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/config.guess [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/config.h.in [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/configure [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/configure.ac [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/depcomp [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CHANGES [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/COPYING [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/CVS/Entries [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/CVS/Repository [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/CVS/Root [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/Entries [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/Repository [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/Root [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/CVS/Template [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/INSTALL [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/Makefile [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/README [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/TODO [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/autom4te.cache/output.0 [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/autom4te.cache/requests [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/autom4te.cache/traces.0 [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/config.guess [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/config.sub [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/configure [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/configure.in [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/CVS/Entries [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/CVS/Repository [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/CVS/Root [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/Entries [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/Repository [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/Root [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/CVS/Template [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/Makefile [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/demo_cpp.cpp [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/demo_f.f [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/descrip.mms [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/g2_anim.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/g2_arc.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/g2_splines_demo.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/g2_test.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/g2_test.f [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/handles.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/penguin.c [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/penguin.inc [new file with mode: 0644]
binaries/src/ViennaRNA/RNAforester/g2-0.70/demo/pointer.c [new file with mode: 0644]
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binaries/src/ViennaRNA/man/RNApaln.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAparconv.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNApdist.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAplex.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAplfold.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAplot.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAsnoop.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAsubopt.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/RNAup.1 [new file with mode: 0644]
binaries/src/ViennaRNA/man/cmdlopt.sh.in [new file with mode: 0644]
binaries/src/ViennaRNA/man/texinfo.tex [new file with mode: 0644]
binaries/src/ViennaRNA/misc/2Dlandscape_mfe.gri [new file with mode: 0644]
binaries/src/ViennaRNA/misc/2Dlandscape_pf.gri [new file with mode: 0644]
binaries/src/ViennaRNA/misc/Makefile.am [new file with mode: 0644]
binaries/src/ViennaRNA/misc/Makefile.in [new file with mode: 0644]
binaries/src/ViennaRNA/misc/PKGBUILD.in [new file with mode: 0644]
binaries/src/ViennaRNA/misc/ViennaRNA.spec.in [new file with mode: 0644]
binaries/src/ViennaRNA/misc/dna_mathews1999.par [new file with mode: 0644]
binaries/src/ViennaRNA/misc/dna_mathews2004.par [new file with mode: 0644]
binaries/src/ViennaRNA/misc/rna_andronescu2007.par [new file with mode: 0644]
binaries/src/ViennaRNA/misc/rna_turner1999.par [new file with mode: 0644]
binaries/src/ViennaRNA/misc/rna_turner2004.par [new file with mode: 0644]
binaries/src/ViennaRNA/missing [new file with mode: 0644]
webservices/compbio/ws/client/WSTester.java
webservices/compbio/ws/server/resource/AAConWS.wsdl
webservices/compbio/ws/server/resource/AAConWS_schema1.xsd
webservices/compbio/ws/server/resource/ClustalWS.wsdl
webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd
webservices/compbio/ws/server/resource/DisemblWS.wsdl
webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd
webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd
webservices/compbio/ws/server/resource/IUPredWS.wsdl
webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd
webservices/compbio/ws/server/resource/JronnWS.wsdl
webservices/compbio/ws/server/resource/JronnWS_schema1.xsd
webservices/compbio/ws/server/resource/MafftWS.wsdl
webservices/compbio/ws/server/resource/MafftWS_schema1.xsd
webservices/compbio/ws/server/resource/MuscleWS.wsdl
webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl [new file with mode: 0644]
webservices/compbio/ws/server/resource/RNAalifoldWS_schema1.xsd
webservices/compbio/ws/server/resource/RegistryWS.wsdl
webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd
wsbuild.xml