binaries/src/ViennaRNA/doc/html/svm__utils_8h_source.html

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  68 <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__</span></div>
  69 <div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_SUBOPT_H__</span></div>
  70 <div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor"></span></div>
  71 <div class="line"><a name="l00004"></a><span class="lineno"><a class="code" href="structsvm__model.html">    4</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="structsvm__model.html">svm_model</a>{</div>
  72 <div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;  <span class="keyword">struct </span>svm_parameter param;</div>
  73 <div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;  <span class="keywordtype">int</span> nr_class;</div>
  74 <div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;  <span class="keywordtype">int</span> l;</div>
  75 <div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;  <span class="keyword">struct </span>svm_node **SV;</div>
  76 <div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;  <span class="keywordtype">double</span> **sv_coef;</div>
  77 <div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;  <span class="keywordtype">double</span> *rho;</div>
  78 <div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;  <span class="keywordtype">double</span> *probA;</div>
  79 <div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;  <span class="keywordtype">double</span> *probB;</div>
  80 <div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;  <span class="keywordtype">int</span> *label;</div>
  81 <div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;  <span class="keywordtype">int</span> *nSV;</div>
  82 <div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;  <span class="keywordtype">int</span> free_sv;</div>
  83 <div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;} <a class="code" href="structsvm__model.html">svm_model</a>;</div>
  84 <div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;</div>
  85 <div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">extern</span>  <span class="keywordtype">char</span> *avg_model_string;</div>
  86 <div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="keyword">extern</span>  <span class="keywordtype">char</span> *sd_model_string;</div>
  87 <div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;</div>
  88 <div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="keywordtype">float</span>     get_z(<span class="keywordtype">char</span> *sequence,</div>
  89 <div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;                <span class="keywordtype">double</span> energy);</div>
  90 <div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="keywordtype">double</span>    avg_regression (<span class="keywordtype">int</span> N,</div>
  91 <div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;                          <span class="keywordtype">int</span> A,</div>
  92 <div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;                          <span class="keywordtype">int</span> C,</div>
  93 <div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;                          <span class="keywordtype">int</span> G,</div>
  94 <div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;                          <span class="keywordtype">int</span> T,</div>
  95 <div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;                          <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a> *avg_model,</div>
  96 <div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;                          <span class="keywordtype">int</span> *info );</div>
  97 <div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="keywordtype">double</span>    sd_regression  (<span class="keywordtype">int</span> N,</div>
  98 <div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;                          <span class="keywordtype">int</span> A,</div>
  99 <div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;                          <span class="keywordtype">int</span> C,</div>
 100 <div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;                          <span class="keywordtype">int</span> G,</div>
 101 <div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;                          <span class="keywordtype">int</span> T,</div>
 102 <div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;                          <span class="keyword">struct</span> <a class="code" href="structsvm__model.html">svm_model</a>  *sd_model);</div>
 103 <div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="keywordtype">double</span>    minimal_sd     (<span class="keywordtype">int</span> N,</div>
 104 <div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;                          <span class="keywordtype">int</span> A,</div>
 105 <div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;                          <span class="keywordtype">int</span> C,</div>
 106 <div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;                          <span class="keywordtype">int</span> G,</div>
 107 <div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;                          <span class="keywordtype">int</span> T);</div>
 108 <div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<a class="code" href="structsvm__model.html">svm_model</a> *svm_load_model_string(<span class="keywordtype">char</span> *modelString);</div>
 109 <div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="keywordtype">int</span>       *get_seq_composition( <span class="keywordtype">short</span> *S,</div>
 110 <div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;                                <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> start,</div>
 111 <div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;                                <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> stop);</div>
 112 <div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
 113 <div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#endif</span></div>
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