WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / MEA_8h_source.html
1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
2 <html xmlns="http://www.w3.org/1999/xhtml">
3 <head>
4 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
5 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
6 <title>RNAlib-2.1.2: /home/mescalin/ronny/public_html/programs/ViennaRNA/H/MEA.h Source File</title>
7 <link href="tabs.css" rel="stylesheet" type="text/css"/>
8 <script type="text/javascript" src="jquery.js"></script>
9 <script type="text/javascript" src="dynsections.js"></script>
10 <link href="navtree.css" rel="stylesheet" type="text/css"/>
11 <script type="text/javascript" src="resize.js"></script>
12 <script type="text/javascript" src="navtree.js"></script>
13 <script type="text/javascript">
14   $(document).ready(initResizable);
15 </script>
16 <link href="doxygen.css" rel="stylesheet" type="text/css" />
17 </head>
18 <body>
19 <div id="top"><!-- do not remove this div, it is closed by doxygen! -->
20 <div id="titlearea">
21 <table cellspacing="0" cellpadding="0">
22  <tbody>
23  <tr style="height: 56px;">
24   <td style="padding-left: 0.5em;">
25    <div id="projectname">RNAlib-2.1.2
26    </div>
27   </td>
28  </tr>
29  </tbody>
30 </table>
31 </div>
32 <!-- end header part -->
33 <!-- Generated by Doxygen 1.8.1.1 -->
34   <div id="navrow1" class="tabs">
35     <ul class="tablist">
36       <li><a href="index.html"><span>Main&#160;Page</span></a></li>
37       <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
38       <li><a href="modules.html"><span>Modules</span></a></li>
39       <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
40       <li class="current"><a href="files.html"><span>Files</span></a></li>
41     </ul>
42   </div>
43   <div id="navrow2" class="tabs2">
44     <ul class="tablist">
45       <li><a href="files.html"><span>File&#160;List</span></a></li>
46       <li><a href="globals.html"><span>Globals</span></a></li>
47     </ul>
48   </div>
49 </div><!-- top -->
50 <div id="side-nav" class="ui-resizable side-nav-resizable">
51   <div id="nav-tree">
52     <div id="nav-tree-contents">
53     </div>
54   </div>
55   <div id="splitbar" style="-moz-user-select:none;" 
56        class="ui-resizable-handle">
57   </div>
58 </div>
59 <script type="text/javascript">
60 $(document).ready(function(){initNavTree('MEA_8h.html','');});
61 </script>
62 <div id="doc-content">
63 <div class="header">
64   <div class="headertitle">
65 <div class="title">MEA.h</div>  </div>
66 </div><!--header-->
67 <div class="contents">
68 <a href="MEA_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_MEA_H__</span></div>
69 <div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_MEA_H__</span></div>
70 <div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor"></span></div>
71 <div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found here.">data_structures.h</a>&quot;</span></div>
72 <div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;</div>
73 <div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="keywordtype">float</span> <a class="code" href="MEA_8h.html#a396ec6144c6a74fcbab4cea6b42d76c3" title="Computes a MEA (maximum expected accuracy) structure.">MEA</a>(<a class="code" href="structplist.html" title="this datastructure is used as input parameter in functions of PS_dot.h and others">plist</a> *p,</div>
74 <div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;          <span class="keywordtype">char</span> *structure,</div>
75 <div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;          <span class="keywordtype">double</span> gamma);</div>
76 <div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;</div>
77 <div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="keywordtype">float</span> MEA_seq(<a class="code" href="structplist.html" title="this datastructure is used as input parameter in functions of PS_dot.h and others">plist</a> *p,</div>
78 <div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;              <span class="keyword">const</span> <span class="keywordtype">char</span> *sequence,</div>
79 <div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;              <span class="keywordtype">char</span> *structure,</div>
80 <div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;              <span class="keywordtype">double</span> gamma,</div>
81 <div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;              <a class="code" href="structpf__paramT.html" title="The datastructure that contains temperature scaled Boltzmann weights of the energy parameters...">pf_paramT</a> *pf);</div>
82 <div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;</div>
83 <div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor">#endif</span></div>
84 </div><!-- fragment --></div><!-- contents -->
85 </div><!-- doc-content -->
86 <!-- start footer part -->
87 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
88   <ul>
89     <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="MEA_8h.html">MEA.h</a></li>
90     <li class="footer">Generated on Wed Jul 24 2013 13:38:56 for RNAlib-2.1.2 by
91     <a href="http://www.doxygen.org/index.html">
92     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
93   </ul>
94 </div>
95 </body>
96 </html>