WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / man / Makefile.am
1 info_TEXINFOS = RNAlib.texinfo
2
3 dist_man_MANS = RNA2Dfold.1 RNAaliduplex.1 RNAalifold.1 RNAcofold.1 RNAduplex.1 RNAeval.1\
4                 RNAfold.1 RNAheat.1 RNAinverse.1 RNALalifold.1 RNALfold.1\
5                 RNApaln.1 RNAparconv.1 RNAplfold.1 RNAplot.1 RNAsubopt.1 RNAup.1\
6                 RNAPKplex.1 RNAsnoop.1 RNAplex.1 RNAdistance.1 RNApdist.1
7
8 # remove all generated man pages
9 maintainer-clean-local:
10         -rm -f $(dist_man_MANS)
11
12 RNA2Dfold.1:  ../Progs/RNA2Dfold.ggo
13         ./help2man -N --help-option=--detailed-help\
14                 --opt-include=./include/ref_package.inc\
15                 --opt-include=./include/RNA2Dfold.inc\
16                 --opt-include=./include/ref_energy_par.inc\
17                 "./cmdlopt.sh ../Progs/RNA2Dfold.ggo" > RNA2Dfold.1
18
19 RNAaliduplex.1:  ../Progs/RNAaliduplex.ggo
20         ./help2man -N --help-option=--detailed-help\
21                 --opt-include=./include/ref_package.inc\
22                 --opt-include=./include/RNAaliduplex.inc\
23                 --opt-include=./include/ref_energy_par.inc\
24                 "./cmdlopt.sh ../Progs/RNAaliduplex.ggo" > RNAaliduplex.1
25
26 RNAalifold.1:  ../Progs/RNAalifold.ggo
27         ./help2man -N --help-option=--detailed-help\
28                 --opt-include=./include/ref_package.inc\
29                 --opt-include=./include/RNAalifold.inc\
30                 --opt-include=./include/ref_energy_par.inc\
31                 "./cmdlopt.sh ../Progs/RNAalifold.ggo" > RNAalifold.1
32
33 RNAcofold.1:  ../Progs/RNAcofold.ggo
34         ./help2man -N --help-option=--detailed-help\
35                 --opt-include=./include/ref_package.inc\
36                 --opt-include=./include/RNAcofold.inc\
37                 --opt-include=./include/ref_energy_par.inc\
38                 "./cmdlopt.sh ../Progs/RNAcofold.ggo" > RNAcofold.1
39
40 RNAduplex.1:  ../Progs/RNAduplex.ggo
41         ./help2man -N --help-option=--detailed-help\
42                 --opt-include=./include/ref_package.inc\
43                 --opt-include=./include/RNAduplex.inc\
44                 --opt-include=./include/ref_energy_par.inc\
45                 "./cmdlopt.sh ../Progs/RNAduplex.ggo" > RNAduplex.1
46
47 RNAeval.1:  ../Progs/RNAeval.ggo
48         ./help2man -N --help-option=--detailed-help\
49                 --opt-include=./include/ref_package.inc\
50                 --opt-include=./include/RNAeval.inc\
51                 --opt-include=./include/ref_energy_par.inc\
52                 "./cmdlopt.sh ../Progs/RNAeval.ggo" > RNAeval.1
53
54 RNAfold.1:  ../Progs/RNAfold.ggo
55         ./help2man -N --help-option=--detailed-help\
56                 --opt-include=./include/ref_package.inc\
57                 --opt-include=./include/RNAfold.inc\
58                 --opt-include=./include/ref_energy_par.inc\
59                 "./cmdlopt.sh ../Progs/RNAfold.ggo" > RNAfold.1
60
61 RNAheat.1:  ../Progs/RNAheat.ggo
62         ./help2man -N --help-option=--detailed-help\
63                 --opt-include=./include/ref_package.inc\
64                 --opt-include=./include/RNAheat.inc\
65                 --opt-include=./include/ref_energy_par.inc\
66                 "./cmdlopt.sh ../Progs/RNAheat.ggo" > RNAheat.1
67
68 RNAinverse.1:  ../Progs/RNAinverse.ggo
69         ./help2man -N --help-option=--detailed-help\
70                 --opt-include=./include/ref_package.inc\
71                 --opt-include=./include/RNAinverse.inc\
72                 --opt-include=./include/ref_energy_par.inc\
73                 "./cmdlopt.sh ../Progs/RNAinverse.ggo" > RNAinverse.1
74
75 RNALalifold.1:  ../Progs/RNALalifold.ggo
76         ./help2man -N --help-option=--detailed-help\
77                 --opt-include=./include/ref_package.inc\
78                 --opt-include=./include/RNAalifold.inc\
79                 --opt-include=./include/ref_energy_par.inc\
80                 "./cmdlopt.sh ../Progs/RNALalifold.ggo" > RNALalifold.1
81
82 RNALfold.1:  ../Progs/RNALfold.ggo
83         ./help2man -N --help-option=--detailed-help\
84                 --opt-include=./include/ref_package.inc\
85                 --opt-include=./include/RNALfold.inc\
86                 --opt-include=./include/ref_energy_par.inc\
87                 "./cmdlopt.sh ../Progs/RNALfold.ggo" > RNALfold.1
88
89 RNApaln.1:  ../Progs/RNApaln.ggo
90         ./help2man -N --help-option=--detailed-help\
91                 --opt-include=./include/ref_package.inc\
92                 --opt-include=./include/RNApaln.inc\
93                 --opt-include=./include/ref_energy_par.inc\
94                 "./cmdlopt.sh ../Progs/RNApaln.ggo" > RNApaln.1
95
96 RNAparconv.1:  ../Progs/RNAparconv.ggo
97         ./help2man -N --help-option=--detailed-help\
98                 --opt-include=./include/ref_package.inc\
99                 --opt-include=./include/RNAparconv.inc\
100                 --opt-include=./include/ref_energy_par.inc\
101                 "./cmdlopt.sh ../Progs/RNAparconv.ggo" > RNAparconv.1
102
103 RNAplfold.1:  ../Progs/RNAplfold.ggo
104         ./help2man -N --help-option=--detailed-help\
105                 --opt-include=./include/ref_package.inc\
106                 --opt-include=./include/RNAplfold.inc\
107                 --opt-include=./include/ref_energy_par.inc\
108                 "./cmdlopt.sh ../Progs/RNAplfold.ggo" > RNAplfold.1
109
110 RNAplot.1:  ../Progs/RNAplot.ggo
111         ./help2man -N --help-option=--detailed-help\
112                 --opt-include=./include/ref_package.inc\
113                 --opt-include=./include/RNAplot.inc\
114                 "./cmdlopt.sh ../Progs/RNAplot.ggo" > RNAplot.1
115
116 RNAsubopt.1:  ../Progs/RNAsubopt.ggo
117         ./help2man -N --help-option=--detailed-help\
118                 --opt-include=./include/ref_package.inc\
119                 --opt-include=./include/RNAsubopt.inc\
120                 --opt-include=./include/ref_energy_par.inc\
121                 "./cmdlopt.sh ../Progs/RNAsubopt.ggo" > RNAsubopt.1
122
123 RNAup.1:  ../Progs/RNAup.ggo
124         ./help2man -N --help-option=--detailed-help\
125                 --opt-include=./include/ref_package.inc\
126                 --opt-include=./include/RNAup.inc\
127                 --opt-include=./include/ref_energy_par.inc\
128                 "./cmdlopt.sh ../Progs/RNAup.ggo" > RNAup.1
129
130 RNAplex.1:  ../Progs/RNAplex.ggo
131         ./help2man -N --help-option=--detailed-help\
132                 --opt-include=./include/ref_package.inc\
133                 --opt-include=./include/RNAplex.inc\
134                 --opt-include=./include/ref_energy_par.inc\
135                 "./cmdlopt.sh ../Progs/RNAplex.ggo" > RNAplex.1
136
137 RNAPKplex.1:  ../Progs/RNAPKplex.ggo
138         ./help2man -N --help-option=--detailed-help\
139                 --opt-include=./include/ref_package.inc\
140                 --opt-include=./include/RNAPKplex.inc\
141                 --opt-include=./include/ref_energy_par.inc\
142                 "./cmdlopt.sh ../Progs/RNAPKplex.ggo" > RNAPKplex.1
143
144 RNAsnoop.1:  ../Progs/RNAsnoop.ggo
145         ./help2man -N --help-option=--detailed-help\
146                 --opt-include=./include/ref_package.inc\
147                 --opt-include=./include/RNAsnoop.inc\
148                 --opt-include=./include/ref_energy_par.inc\
149                 "./cmdlopt.sh ../Progs/RNAsnoop.ggo" > RNAsnoop.1
150
151 RNAdistance.1:  ../Progs/RNAdistance.ggo
152         ./help2man -N --help-option=--detailed-help\
153                 --opt-include=./include/ref_package.inc\
154                 --opt-include=./include/RNAdistance.inc\
155                 "./cmdlopt.sh ../Progs/RNAdistance.ggo" > RNAdistance.1
156
157 RNApdist.1:  ../Progs/RNApdist.ggo
158         ./help2man -N --help-option=--detailed-help\
159                 --opt-include=./include/ref_package.inc\
160                 --opt-include=./include/RNApdist.inc\
161                 --opt-include=./include/ref_energy_par.inc\
162                 "./cmdlopt.sh ../Progs/RNApdist.ggo" > RNApdist.1
163
164
165
166