binaries/src/ViennaRNA/doc/html/params_8h.html

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  65 <a href="#func-members">Functions</a>  </div>
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  67 <div class="title">params.h File Reference<div class="ingroups"><a class="el" href="group__energy__parameters.html">Change and Precalculate Energy Parameter Sets and Boltzmann Factors</a></div></div>  </div>
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  89 <p><a href="params_8h_source.html">Go to the source code of this file.</a></p>
  90 <table class="memberdecls">
  91 <tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
  92 Functions</h2></td></tr>
  93 <tr class="memitem:ga527ef619cd8210b84d5d53be1e0e29b6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structparamT.html">paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#ga527ef619cd8210b84d5d53be1e0e29b6">scale_parameters</a> (void)</td></tr>
  94 <tr class="memdesc:ga527ef619cd8210b84d5d53be1e0e29b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get precomputed energy contributions for all the known loop types.  <a href="group__energy__parameters.html#ga527ef619cd8210b84d5d53be1e0e29b6"></a><br/></td></tr>
  95 <tr class="memitem:gac2f3ca440b7eaf4d999fb27da949fe72"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structparamT.html">paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#gac2f3ca440b7eaf4d999fb27da949fe72">get_scaled_parameters</a> (double <a class="el" href="fold__vars_8h.html#ab4b11c8d9c758430960896bc3fe82ead">temperature</a>, <a class="el" href="structmodel__detailsT.html">model_detailsT</a> md)</td></tr>
  96 <tr class="memdesc:gac2f3ca440b7eaf4d999fb27da949fe72"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get precomputed energy contributions for all the known loop types.  <a href="group__energy__parameters.html#gac2f3ca440b7eaf4d999fb27da949fe72"></a><br/></td></tr>
  97 <tr class="memitem:gab85f6b6da051f380371deb0d8921bdba"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structpf__paramT.html">pf_paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#gab85f6b6da051f380371deb0d8921bdba">get_scaled_pf_parameters</a> (void)</td></tr>
  98 <tr class="memitem:ga6fc2f3eef5a3024d44963ac59a42e39d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structpf__paramT.html">pf_paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#ga6fc2f3eef5a3024d44963ac59a42e39d">get_boltzmann_factors</a> (double <a class="el" href="fold__vars_8h.html#ab4b11c8d9c758430960896bc3fe82ead">temperature</a>, double betaScale, <a class="el" href="structmodel__detailsT.html">model_detailsT</a> md, double <a class="el" href="fold__vars_8h.html#ad3b22044065acc6dee0af68931b52cfd">pf_scale</a>)</td></tr>
  99 <tr class="memdesc:ga6fc2f3eef5a3024d44963ac59a42e39d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get precomputed Boltzmann factors of the loop type dependent energy contributions with independent thermodynamic temperature.  <a href="group__energy__parameters.html#ga6fc2f3eef5a3024d44963ac59a42e39d"></a><br/></td></tr>
 100 <tr class="memitem:gacba212326a051734797e65987260fdd0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structpf__paramT.html">pf_paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#gacba212326a051734797e65987260fdd0">get_boltzmann_factor_copy</a> (<a class="el" href="structpf__paramT.html">pf_paramT</a> *parameters)</td></tr>
 101 <tr class="memdesc:gacba212326a051734797e65987260fdd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a copy of already precomputed Boltzmann factors.  <a href="group__energy__parameters.html#gacba212326a051734797e65987260fdd0"></a><br/></td></tr>
 102 <tr class="memitem:gaa6a4297a2b91d6f7ae47dd61ca1862a0"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="gaa6a4297a2b91d6f7ae47dd61ca1862a0"></a>
 103 <a class="el" href="structpf__paramT.html">pf_paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#gaa6a4297a2b91d6f7ae47dd61ca1862a0">get_scaled_alipf_parameters</a> (unsigned int n_seq)</td></tr>
 104 <tr class="memdesc:gaa6a4297a2b91d6f7ae47dd61ca1862a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) <br/></td></tr>
 105 <tr class="memitem:gaaa049a8c9f1c2ed4398cb1b5a3d65a66"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="gaaa049a8c9f1c2ed4398cb1b5a3d65a66"></a>
 106 PUBLIC <a class="el" href="structpf__paramT.html">pf_paramT</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__energy__parameters.html#gaaa049a8c9f1c2ed4398cb1b5a3d65a66">get_boltzmann_factors_ali</a> (unsigned int n_seq, double <a class="el" href="fold__vars_8h.html#ab4b11c8d9c758430960896bc3fe82ead">temperature</a>, double betaScale, <a class="el" href="structmodel__detailsT.html">model_detailsT</a> md, double <a class="el" href="fold__vars_8h.html#ad3b22044065acc6dee0af68931b52cfd">pf_scale</a>)</td></tr>
 107 <tr class="memdesc:gaaa049a8c9f1c2ed4398cb1b5a3d65a66"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) with independent thermodynamic temperature. <br/></td></tr>
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