binaries/src/clustalw/src/tree/UPGMA/RootedClusterTree.h

   1 /**
   2  * Author: Mark Larkin
   3  *
   4  * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
   5  */
   6 #ifndef ROOTEDCLUSTERTREE_H
   7 #define ROOTEDCLUSTERTREE_H
   8 #include "../ClusterTree.h"
   9 #include "RootedGuideTree.h"
  10 #include "../AlignmentSteps.h"
  11 namespace clustalw
  12 {
  13
  14 class RootedClusterTree : private ClusterTree
  15 {
  16     public:
  17         //RootedClusterTree();
  18         /**
  19          * NOTE these will have different signatures!!!!
  20          */
  21         void treeFromAlignment(TreeNames* treeNames, Alignment *alignPtr);
  22         auto_ptr<AlignmentSteps> treeFromDistMatrix(RootedGuideTree* phyloTree,
  23                                         DistMatrix* distMat, Alignment *alignPtr, int seq1,
  24                                         int nSeqs, string& phylipName);
  25 };
  26
  27 }
  28 #endif