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Next version of JABA
authorpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Tue, 20 Jul 2010 11:44:34 +0000 (11:44 +0000)
committerpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Tue, 20 Jul 2010 11:44:34 +0000 (11:44 +0000)
commit535359a3d592ee41bda72e7356f0181f6cee9d07
tree1a80444b449b2a9e588ba051c3c78a5e3d1a0e7etree | snapshot
Next version of JABA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2610 e3abac25-378b-4346-85de-24260fe3988d
2256 files changed:
.classpath [new file with mode: 0644] blob
.project [new file with mode: 0644] blob
.settings/net.sf.jautodoc.prefs [new file with mode: 0644] blob
DEPENDENCY [new file with mode: 0644] blob
IDEAS.txt [new file with mode: 0644] blob
TODO.txt [new file with mode: 0644] blob
WEB-INF/lib/biojava.jar [new file with mode: 0644] blob
WEB-INF/lib/compbio-annotations-1.0.jar [new file with mode: 0644] blob
WEB-INF/lib/compbio-util-1.2.jar [new file with mode: 0644] blob
WEB-INF/lib/drmaa.jar [new file with mode: 0644] blob
WEB-INF/lib/log4j-1.2.15.jar [new file with mode: 0644] blob
WEB-INF/lib/readme.txt [new file with mode: 0644] blob
WEB-INF/lib/webservices-api.jar [new file with mode: 0644] blob
WEB-INF/lib/webservices-rt.jar [new file with mode: 0644] blob
WEB-INF/lib/webservices-tools.jar [new file with mode: 0644] blob
WEB-INF/sun-jaxws.xml [new file with mode: 0644] blob
WEB-INF/web.xml [new file with mode: 0644] blob
apache_license.txt [new file with mode: 0644] blob
binaries/clustalw-help.txt [new file with mode: 0644] blob
binaries/clustalw2.exe [new file with mode: 0644] blob
binaries/linuxAMD64/clustalw2 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/Makefile.nm_fcom [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/Makefile.nm_pcom [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/Makefile.nmk_icl [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/Makefile34.nmk_com [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fasta34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fasta34_t [new file with mode: 0644] blob
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binaries/linuxAMD64/fasta34/fastf34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fastm34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fastm34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fasts34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/fasts34_t [new file with mode: 0644] blob
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binaries/linuxAMD64/fasta34/fastx34_t [new file with mode: 0644] blob
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binaries/linuxAMD64/fasta34/fasty34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/make_osx_univ.sh [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/nr_to_sql.pl [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/prfx34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/prfx34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/prss34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/prss34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/smith_waterman_sse2.h [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/ssearch34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/ssearch34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/test.sh [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/test2.bat [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/test_osx.sh [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/test_s.sh [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/test_z.sh [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasta34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasta34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfastf34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfastf34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfastm34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasts34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasts34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfastx34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfastx34_t [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasty34 [new file with mode: 0644] blob
binaries/linuxAMD64/fasta34/tfasty34_t [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/contrafoldwrap [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/countlen [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/disttbfast [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/dndblast [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/dndfast7 [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/dndpre [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/dndpre2 [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/dvtditr [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/f2cl [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/getlag [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mafft-distance [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mafft-homologs.1 [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mafft-profile [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mafft.1 [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mccaskillwrap [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/multi2hat3s [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/mxscarnamod [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/pair2hat3s [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/pairash [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/pairlocalalign [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/regtable2seq [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/rnatest [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/score [new file with mode: 0644] blob
binaries/linuxAMD64/mafft/seq2regtable [new file with mode: 0644] blob
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binaries/linuxAMD64/probcons [new file with mode: 0644] blob
binaries/linuxAMD64/t_coffee [new file with mode: 0644] blob
binaries/linuxIA32/clustalw2 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/Makefile.nm_fcom [new file with mode: 0644] blob
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binaries/linuxIA32/fasta34/Makefile.nmk_icl [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/Makefile34.nmk_com [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasta34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasta34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastf34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastf34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastm34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastm34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasts34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasts34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastx34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fastx34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasty34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/fasty34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/make_osx_univ.sh [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/nr_to_sql.pl [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/prfx34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/prfx34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/prss34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/prss34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/smith_waterman_sse2.h [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/ssearch34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/ssearch34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/test.sh [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/test2.bat [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/test_osx.sh [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/test_s.sh [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/test_z.sh [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasta34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasta34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfastf34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfastf34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfastm34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasts34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasts34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfastx34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfastx34_t [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasty34 [new file with mode: 0644] blob
binaries/linuxIA32/fasta34/tfasty34_t [new file with mode: 0644] blob
binaries/linuxIA32/mafft/contrafoldwrap [new file with mode: 0644] blob
binaries/linuxIA32/mafft/countlen [new file with mode: 0644] blob
binaries/linuxIA32/mafft/disttbfast [new file with mode: 0644] blob
binaries/linuxIA32/mafft/dndblast [new file with mode: 0644] blob
binaries/linuxIA32/mafft/dndfast7 [new file with mode: 0644] blob
binaries/linuxIA32/mafft/dndpre [new file with mode: 0644] blob
binaries/linuxIA32/mafft/dndpre2 [new file with mode: 0644] blob
binaries/linuxIA32/mafft/dvtditr [new file with mode: 0644] blob
binaries/linuxIA32/mafft/f2cl [new file with mode: 0644] blob
binaries/linuxIA32/mafft/getlag [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mafft [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mafft-distance [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mafft-homologs.1 [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mafft-profile [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mafft.1 [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mccaskillwrap [new file with mode: 0644] blob
binaries/linuxIA32/mafft/multi2hat3s [new file with mode: 0644] blob
binaries/linuxIA32/mafft/mxscarnamod [new file with mode: 0644] blob
binaries/linuxIA32/mafft/pair2hat3s [new file with mode: 0644] blob
binaries/linuxIA32/mafft/pairash [new file with mode: 0644] blob
binaries/linuxIA32/mafft/pairlocalalign [new file with mode: 0644] blob
binaries/linuxIA32/mafft/regtable2seq [new file with mode: 0644] blob
binaries/linuxIA32/mafft/rnatest [new file with mode: 0644] blob
binaries/linuxIA32/mafft/score [new file with mode: 0644] blob
binaries/linuxIA32/mafft/seq2regtable [new file with mode: 0644] blob
binaries/linuxIA32/mafft/setcore [new file with mode: 0644] blob
binaries/linuxIA32/mafft/sextet5 [new file with mode: 0644] blob
binaries/linuxIA32/mafft/splittbfast [new file with mode: 0644] blob
binaries/linuxIA32/mafft/tbfast [new file with mode: 0644] blob
binaries/linuxIA32/muscle [new file with mode: 0644] blob
binaries/linuxIA32/probcons [new file with mode: 0644] blob
binaries/linuxIA32/t_coffee [new file with mode: 0644] blob
binaries/mafft_manual.htm [new file with mode: 0644] blob
binaries/matrices/BLOSUM100 [new file with mode: 0644] blob
binaries/matrices/BLOSUM30 [new file with mode: 0644] blob
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binaries/matrices/NUC.4.2 [new file with mode: 0644] blob
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binaries/muscle.exe [new file with mode: 0644] blob
binaries/muscle3.6.html [new file with mode: 0644] blob
binaries/muscle3.7.txt [new file with mode: 0644] blob
binaries/probcons.pdf [new file with mode: 0644] blob
binaries/src/clustalw/LICENSE [new file with mode: 0644] blob
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binaries/src/clustalw/Makefile.am [new file with mode: 0644] blob
binaries/src/clustalw/Makefile.in [new file with mode: 0644] blob
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binaries/src/clustalw/aclocal.m4 [new file with mode: 0644] blob
binaries/src/clustalw/clustalw_help [new file with mode: 0644] blob
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binaries/src/clustalw/config.status [new file with mode: 0644] blob
binaries/src/clustalw/config.sub [new file with mode: 0644] blob
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