binaries/src/clustalw/src/tree/UnRootedClusterTree.h

   1 /**
   2  * Author: Mark Larkin
   3  *
   4  * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
   5  */
   6 #ifndef UNROOTEDCLUSTERTREE_H
   7 #define UNROOTEDCLUSTERTREE_H
   8 #include "ClusterTree.h"
   9
  10 namespace clustalw
  11 {
  12
  13 class UnRootedClusterTree : private ClusterTree
  14 {
  15     public:
  16         UnRootedClusterTree();
  17         void treeFromAlignment(TreeNames* treeNames, Alignment *alignPtr);
  18         void treeFromDistMatrix(DistMatrix* distMat, Alignment *alignPtr, int seq1,
  19                                 int nSeqs, string& phylipName);
  20         void bootstrapTree(TreeNames* treeNames, Alignment *alignPtr);
  21     private:
  22         PhyloTree* phyloTree;
  23         ClusterTreeOutput* outputTree;
  24 };
  25
  26 }
  27 #endif