binaries/src/fasta34/smith_waterman_altivec.h

   1
   2 int
   3 smith_waterman_altivec_word(const unsigned char *     query_sequence,
   4                             unsigned short *    query_profile_word,
   5                             const int                 query_length,
   6                             const unsigned char *     db_sequence,
   7                             const int                 db_length,
   8                             unsigned short      bias,
   9                             unsigned short      gap_open,
  10                             unsigned short      gap_extend,
  11                             struct f_struct *   f_str);
  12
  13
  14 int
  15 smith_waterman_altivec_byte(const unsigned char *     query_sequence,
  16                             unsigned char *     query_profile_byte,
  17                             const int                 query_length,
  18                             const unsigned char *     db_sequence,
  19                             const int                 db_length,
  20                             unsigned char       bias,
  21                             unsigned char       gap_open,
  22                             unsigned char       gap_extend,
  23                             struct f_struct *   f_str);
  24