Next version of JABA
[jabaws.git] / binaries / src / mafft / test / sample.linsi
1 >     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 MN----------------------GTEGDNFYVPFSNKTGLA--RSPYEYPQY-------
3 ------------------YLAEPW-------------------KYSALAAYMFFLILVGF
4 PVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPT
5 MCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC
6 -AAPPLV-GWS-----RYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIF
7 FCYGRLLCTVKEAAAAQQESA---------------------------------------
8 ------------------------------------------------------------
9 ------------------------------------------STQKAEKEVTRMVVLMVI
10 GFLVCWVPYASVAFYIFT--HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNC
11 MITTL-----CCGKNPLGDDESG--AS-TSKTEVS-------------------------
12 ------------------------------------------------------------
13 -SVS-TSPVSPA---
14 >     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
15 MN----------------------GTEGPNFYVPFSNITGVV--RSPFEQPQY-------
16 ------------------YLAEPW-------------------QFSMLAAYMFLLIVLGF
17 PINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPT
18 GCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC
19 -AAPPLV-GWS-----RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
20 FCYGQLVFTVKEAAAQQQESA---------------------------------------
21 ------------------------------------------------------------
22 ------------------------------------------TTQKAEKEVTRMVIIMVI
23 FFLICWLPYASVAMYIFT--HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNC
24 MLTSL-----CCGKNPLGDDEAS--AT-ASKTETS-------------------------
25 ------------------------------------------------------------
26 -QVA-PA--------
27 >     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
28 MN----------------------GTEGINFYVPMSNKTGVV--RSPFEYPQY-------
29 ------------------YLAEPW-------------------KYRLVCCYIFFLISTGL
30 PINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPV
31 GCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC
32 -AAPPLF-GWS-----RYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIF
33 FSYGRLICKVREAAAQQQESA---------------------------------------
34 ------------------------------------------------------------
35 ------------------------------------------TTQKAEKEVTRMVILMVL
36 GFMLAWTPYAVVAFWIFT--NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNC
37 MITTI-----CCGKNPFGDEDVSSTVS-QSKTEVS-------------------------
38 ------------------------------------------------------------
39 -SVS-SSQVSPA---
40 >     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
41 MN----------------------GTEGKNFYVPMSNRTGLV--RSPFEYPQY-------
42 ------------------YLAEPW-------------------QFKILALYLFFLMSMGL
43 PINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPT
44 GCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC
45 -AAPPLF-GWS-----RYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIF
46 FTYGRLVCTVKAAAAQQQDSA---------------------------------------
47 ------------------------------------------------------------
48 ------------------------------------------STQKAEREVTKMVILMVF
49 GFLIAWTPYATVAAWIFF--NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNC
50 MLTTI-----FCGKNPLGDDESS-TVS-TSKTEVS-------------------------
51 ------------------------------------------------------------
52 -SVS-PA--------
53 >     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
54 MN----------------------GTEGNNFYVPLSNRTGLV--RSPFEYPQY-------
55 ------------------YLAEPW-------------------QFKLLAVYMFFLICLGL
56 PINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPT
57 GCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC
58 -AAPPLV-GWS-----RYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIF
59 FTYGRLVCTVKAAAAQQQDSA---------------------------------------
60 ------------------------------------------------------------
61 ------------------------------------------STQKAEREVTKMVILMVL
62 GFLVAWTPYATVAAWIFF--NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSC
63 MLTTL-----FCGKNPLGDEESS-TVS-TSKTEVS-------------------------
64 ------------------------------------------------------------
65 -SVS-PA--------
66 >     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
67 MK--------------------QVPEFHEDFYIPIPLDINNLSAYSPFLVPQD-------
68 ------------------HLGNQG-------------------IFMAMSVFMFFIFIGGA
69 SINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGAT
70 ACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA
71 -SLPPLF-GWS-----RYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIV
72 FCYGQLLITLKLAAKAQADSA---------------------------------------
73 ------------------------------------------------------------
74 ------------------------------------------STQKAEREVTKMVVVMVL
75 GFLVCWAPYASFSLWIVS--HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSC
76 MMKMV------CGKN-IEEDEAS--TS-SQVTQVS-------------------------
77 ------------------------------------------------------------
78 -SVA-PEK-------
79 >     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
80 MR----------------------KMSEEEFYL-----FKNISSVGPWDGPQY-------
81 ------------------HIAPVW-------------------AFYLQAAFMGTVFLIGF
82 PLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRH
83 VCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV
84 -SIPPFF-GWS-----RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLIC
85 FSYTQLLRALKAVAAQQQESA---------------------------------------
86 ------------------------------------------------------------
87 ------------------------------------------TTQKAEREVSRMVVVMVG
88 SFCVCYVPYAAFAMYMVN--NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC
89 IMKMV------CGKA---MTDESDTCS-SQKTEVS-------------------------
90 ------------------------------------------------------------
91 -TVS-STQVGPN---
92 >     8=opsin, greensensitive  human (fragment) S07060
93 ------------------------------------------------------------
94 ------------------------------------------------------------
95 ------------------------------DLAETVIA-STISIVNQVS-GYFV--LGHP
96 MCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW
97 -TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIV
98 LCYLQVWLAIRAVAKQQKESE---------------------------------------
99 ------------------------------------------------------------
100 ------------------------------------------STQKAEKEVTRMVVVMVL
101 AFC---------------------------------------------------------
102 ------------------------------------------------------------
103 ------------------------------------------------------------
104 ---------------
105 >     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
106 MAQQWSLQRLAGRHPQDS-YEDSTQ--SSIFTY-----TNSNSTRGPFEGPNY-------
107 ------------------HIAPRW-------------------VYHLTSVWMIFVVIASV
108 FTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHP
109 MCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW
110 -TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIV
111 LCYLQVWLAIRAVAKQQKESE---------------------------------------
112 ------------------------------------------------------------
113 ------------------------------------------STQKAEKEVTRMVVVMVL
114 AFCFCWGPYAFFACFAAA--NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNC
115 ILQLF----------GKKVDDGSELSS-ASKTEVS-------------------------
116 ------------------------------------------------------------
117 -SVS---SVSPA---
118 >    10== Z68193   1 human Red Opsin <>[]
119 MAQQWSLQRLAGRHPQDS-YEDSTQ--SSIFTY-----TNSNSTRGPFEGPNY-------
120 ------------------HIAPRW-------------------VYHLTSVWMIFVVTASV
121 FTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHP
122 MCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW
123 -TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIM
124 LCYLQVWLAIRAVAKQQKESE---------------------------------------
125 ------------------------------------------------------------
126 ------------------------------------------STQKAEKEVTRMVVVMIF
127 AYCVCWGPYTFFACFAAA--NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNC
128 ILQLF----------GKKVDDGSELSS-ASKTEVS-------------------------
129 ------------------------------------------------------------
130 -SVS---SVSPA---
131 >    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
132 MTEAWNVAVFAARRSRDD--DDTTR--GSVFTY-----TNTNNTRGPFEGPNY-------
133 ------------------HIAPRW-------------------VYNLVSFFMIIVVIASC
134 FTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHP
135 LCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW
136 -SAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIII
137 VCYLQVWMAIRAVAAQQKESE---------------------------------------
138 ------------------------------------------------------------
139 ------------------------------------------STQKAEREVSRMVVVMIV
140 AFCICWGPYASFVSFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNC
141 IMQLF----------GKKVDDGSEAST-TSRTEVS-------------------------
142 ------------------------------------------------------------
143 -SVS-NSSVAPA---
144 >    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
145 MA-AWE-AAFAARRRHEE--EDTTR--DSVFTY-----TNSNNTRGPFEGPNY-------
146 ------------------HIAPRW-------------------VYNLTSVWMIFVVAASV
147 FTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHP
148 MCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW
149 -TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIII
150 LCYLQVWLAIRAVAAQQKESE---------------------------------------
151 ------------------------------------------------------------
152 ------------------------------------------STQKAEKEVSRMVVVMIV
153 AYCFCWGPYTFFACFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNC
154 ILQLF----------GKKVDDGSEVST--SRTEVS-------------------------
155 ------------------------------------------------------------
156 -SVS-NSSVSPA---
157 >    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
158 MS-------------------------------SNSSQAPPNGTPGPFDGPQWP------
159 ------------------YQAPQS-------------------TYVGVAVLMGTVVACAS
160 VVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRR
161 MCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW
162 -SAPPLL-GWS-----SYVPEGLRTSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLIL
163 FSYTNLLLTLRAAAAQQKEAD---------------------------------------
164 ------------------------------------------------------------
165 ------------------------------------------TTQRAEREVTRMVIVMVM
166 AFLLCWLPYSTFALVVAT--HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSC
167 LLEML-----CCGYQPQRTGKASPGTP-GPHADVT-------------------------
168 ------------------------------------------------------------
169 -AAGLRNKVMPAHPV
170 >    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
171 MESGNVSSSLFGNVSTALRPEARLSAE----------TRLLGWNVPPEELR---------
172 ------------------HIPEHWLTYP----------EPPESMNYLLGTLYIFFTLMSM
173 LGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--LGHL
174 GCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW
175 -VVACYTETWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMIT
176 YYYSQIVGHVFSHEKALRDQAKKMNVESLR------------------------------
177 ------------------------------------------------------------
178 -------------------------------------SNVDKNKETAEIRIAKAAITICF
179 LFFCSWTPYGVMSLIGAF--GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRME
180 LQKRCPWL--ALNEKAPESSAVASTST-TQEPQQT-------------------------
181 ------------------------------------------------------------
182 -TAA-----------
183 >    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
184 MEYHNVSSVL-GNVSSVLRPDARLSAE----------SRLLGWNVPPDELR---------
185 ------------------HIPEHWLIYP----------EPPESMNYLLGTLYIFFTVISM
186 IGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--LGHL
187 GCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW
188 -VVACYTESWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMIT
189 YYYSQIVGHVFSHEKALRDQAKKMNVDSLR------------------------------
190 ------------------------------------------------------------
191 -------------------------------------SNVDKSKEAAEIRIAKAAITICF
192 LFFASWTPYGVMSLIGAF--GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRME
193 LQKRCPWL--AISEKAPESRAAISTST-TQEQQQT-------------------------
194 ------------------------------------------------------------
195 -TAA-----------
196 >    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
197 ME------PLCNASEPPLRPEAR-SSGNGD-------LQFLGWNVPPDQIQ---------
198 ------------------YIPEHWLTQL----------EPPASMHYMLGVFYIFLFCAST
199 VGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIYLGNT
200 WCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW
201 -VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMIL
202 YYYSQIVGHVFSHEKALREQAKKMNVESLR------------------------------
203 ------------------------------------------------------------
204 -------------------------------------SNVDKSKETAEIRIAKAAITICF
205 LFFVSWTPYGVMSLIGAF--GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLE
206 LQKRCPWL--GVNEKSGEISSAQSTTT-QEQQQTT-------------------------
207 ------------------------------------------------------------
208 -AA------------
209 >    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
210 MD------ALCNASEPPLRPEARMSSGSDE-------LQFLGWNVPPDQIQ---------
211 ------------------YIPEHWLTQL----------EPPASMHYMLGVFYIFLFFAST
212 LGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--LGNT
213 WCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW
214 -VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMIL
215 YYYSQIVGHVFNHEKALREQAKKMNVESLR------------------------------
216 ------------------------------------------------------------
217 -------------------------------------SNVDKSKETAEIRIAKAAITICF
218 LFFVSWTPYGVMSLIGAF--GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRME
219 LQKRCPWL--GVNEKSGEASSAQSTTT-QEQTQQT-------------------------
220 ------------------------------------------------------------
221 -SAA-----------
222 >    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
223 M-----------TNATGPQMAYYGAASMDFGYPE---GVSIVDFVRPEIKP---------
224 ------------------YVHQHWYNYP----------PVNPMWHYLLGVIYLFLGTVSI
225 FGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQ
226 YCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC
227 -ALPPFF-GWG-----NYILEGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIV
228 FSYVFIVKAIFAHEAAMRAQAKKMNVSTLR------------------------------
229 ------------------------------------------------------------
230 -------------------------------------S-NEADAQRAEIRIAKTALVNVS
231 LWFICWTPYALISLKGVM--GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLA
232 ITQHLPWF--CVHETETKSNDDSQSNS-TVAQDKA-------------------------
233 ------------------------------------------------------------
234 ---------------
235 >    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
236 M-----------ANVTGPQMAFYGSGAATFGYPE---GMTVADFVPDRVKH---------
237 ------------------MVLDHWYNYP----------PVNPMWHYLLGVVYLFLGVISI
238 AGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGT
239 YCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW
240 -SLPPFF-GWG-----SYTLEGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIV
241 FSYVFIVKAIFAHEAAMRAQAKKMNVTNLR------------------------------
242 ------------------------------------------------------------
243 -------------------------------------S-NEAETQRAEIRIAKTALVNVS
244 LWFICWTPYAAITIQGLL--GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLA
245 ITQHLPWF--CVHEKDPNDVEENQSSN-TQTQEKS-------------------------
246 ------------------------------------------------------------
247 ---------------
248 >    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
249 ME-----SFAVAAAQLGPHFAPLS-------------NGSVVDKVTPDMAH---------
250 ------------------LISPYWNQFP----------AMDPIWAKILTAYMIMIGMISW
251 CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM
252 MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKM----------
253 -----------------YVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC
254 YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------
255 ------------------------------------------------------------
256 -------------------------------------S-SEDAEKSAEGKLAKVALVTIT
257 LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA
258 LKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAESKA-----------------------
259 ------------------------------------------------------------
260 ---------------
261 >    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
262 ME-----SFAVAAAQLGPHFAPLS-------------NGSVVDKVTPDMAH---------
263 ------------------LISPYWNQFP----------AMDPIWAKILTAYMIMIGMISW
264 CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM
265 MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW
266 -CLAPAF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC
267 YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------
268 ------------------------------------------------------------
269 -------------------------------------S-SEDAEKSAEGKLAKVALVTIT
270 LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA
271 LKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAESKA-----------------------
272 ------------------------------------------------------------
273 ---------------
274 >    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
275 MD-----SFAAVATQLGPQFAAPS-------------NGSVVDKVTPDMAH---------
276 ------------------LISPYWDQFP----------AMDPIWAKILTAYMIIIGMISW
277 CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM
278 MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIW
279 CCLAPVF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC
280 YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------
281 ------------------------------------------------------------
282 -------------------------------------S-SEDADKSAEGKLAKVALVTIS
283 LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA
284 LKEKCPCC--VFGKVDDGKSSEAQSQA-TTSEAESKA-----------------------
285 ------------------------------------------------------------
286 ---------------
287 >    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
288 MERSHLPETPFDLAHSGPRFQAQSSG-----------NGSVLDNVLPDMAH---------
289 ------------------LVNPYWSRFA----------PMDPMMSKILGLFTLAIMIISC
290 CGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPL
291 WCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW
292 -TVMPLI-GWS-----AYVPEGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLIC
293 YSYWFIIAAVAAHEKAMREQAKKMNVKSLR------------------------------
294 ------------------------------------------------------------
295 -------------------------------------S-SEDCDKSAEGKLAKVALTTIS
296 LWFMAWTPYLVICYFGLF---KIDG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIV
297 LKEKCPMC--VFGNTDEPKPDAPASDTETTSEADSKA-----------------------
298 ------------------------------------------------------------
299 ---------------
300 >    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
301 MERSLLPEPPLAMALLGPRFEAQTGG-----------NRSVLDNVLPDMAP---------
302 ------------------LVNPHWSRFA----------PMDPTMSKILGLFTLVILIISC
303 CGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPL
304 WCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW
305 -TIMPLI-GWS-----SYVPEGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMIC
306 YSYWFIIATVAAHEKAMRDQAKKMNVKSLR------------------------------
307 ------------------------------------------------------------
308 -------------------------------------S-SEDCDKSAENKLAKVALTTIS
309 LWFMAWTPYLIICYFGLF---KIDG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLV
310 LKEKCPMC--VCGTTDEPKPDAPPSDTETTSEAESKD-----------------------
311 ------------------------------------------------------------
312 ---------------
313 >    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
314 M-----------IAVSGPSYEAFSYGGQARFN-----NQTVVDKVPPDMLH---------
315 ------------------LIDANWYQYP----------PLNPMWHGILGFVIGMLGFVSA
316 MGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPL
317 FCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW
318 -TIAPMF-GWN-----RYVPEGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLII
319 YSYWFIIQAVAAHEKNMREQAKKMNVASLR------------------------------
320 ------------------------------------------------------------
321 -------------------------------------S-SENQNTSAECKLAKVALMTIS
322 LWFMAWTPYLVINFSGIF---NLVK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAA
323 LFAKFPSL--ACAA-EPSSDAVSTTSG-TTTVTDNEKSNA--------------------
324 ------------------------------------------------------------
325 ---------------
326 >    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
327 M------ANQLSYSSLGWPYQP---------------NASVVDTMPKEMLY---------
328 ------------------MIHEHWYAFP----------PMNPLWYSILGVAMIILGIICV
329 LGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPF
330 MCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW
331 -TILPFF-GWS-----RYVPEGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMI
332 YCYFFIVHAVAEHEKQLREQAKKMNVASLR------------------------------
333 ------------------------------------------------------------
334 -------------------------------------ANADQQKQSAECRLAKVAMMTVG
335 LWFMAWTPYLIISWAGVF--SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAA
336 LYQRFPSL--ACGSGESGSDVKSEASA-TTTMEEKPKIPEA-------------------
337 ------------------------------------------------------------
338 ---------------
339 >    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
340 M-------------------------------VESTTLVNQTWWYNPTV-----------
341 ------------------DIHPHWAKFD----------PIPDAVYYSVGIFIGVVGIIGI
342 LGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKV
343 ACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW
344 -SVGPVF-NWG-----AYVPEGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIA
345 FCYFNIVMSVSNHEKEMAAMAKRLNAKELR------------------------------
346 ------------------------------------------------------------
347 ---------------------------------------KAQAGASAEMKLAKISMVIIT
348 QFMLSWSPYAIIALLAQF--GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREA
349 IQTTFPWLLTCCQFDEKECEDANDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQ
350 QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP
351 QGAPPQGVDNQAYQA
352 >    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
353 M--------------------------------GRDLRDNETWWYNPSI-----------
354 ------------------VVHPHWREFD----------QVPDAVYYSLGIFIGICGIIGC
355 GGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFA
356 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW
357 -AIGPIF-GWG-----AYTLEGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIF
358 FCYFNIVMSVSNHEKEMAAMAKRLNAKELR------------------------------
359 ------------------------------------------------------------
360 ---------------------------------------KAQAGANAEMRLAKISIVIVS
361 QFLLSWSPYAVVALLAQF--GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA
362 ISQTFPWVLTCCQFDDKETEDDKDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQ
363 QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP-----
364 -AAPPQGVDNQAYQA
365 >    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
366 MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDGGADPVAGSWAPHLLS---EVTA---
367 ------------------SPAPTWDAPPDNASGCGEQINYGRVEKVVIGSILTLITLLTI
368 AGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHF
369 FCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI
370 -TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPMSVML
371 FMYYQIYKAARKSAAKHKFP--------------GFPRVEPDSVIALNGIVKLQKEVEE-
372 ------------------------------------------------------------
373 ---------------------------CANLSRLLKHERKNISIFKREQKAATTLGIIVG
374 AFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTT
375 YRSLL-----QCQYRNINRKLSAAGMH-EALKLAERPERPEFVLQNADYCRKKGHDS---
376 ------------------------------------------------------------
377 ---------------
378 >    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
379 M--------------------------------------------PHLLSGFLEVTA---
380 ------------------SPAPTWDAPPDNVSGCGEQINYGRVEKVVIGSILTLITLLTI
381 AGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHF
382 FCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI
383 -TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPMSVML
384 FMYYQIYKAARKSAAKHKFP--------------GFPRVQPESVISLNGVVKLQKEVEE-
385 ------------------------------------------------------------
386 ---------------------------CANLSRLLKHERKNISIFKREQKAATTLGIIVG
387 AFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPT
388 SRSLL-----QCQYRNINRKLSAAGMH-EALKLAERPERSEFVLQNSDHCGKKGHDT---
389 ------------------------------------------------------------
390 ---------------
391 >    31=p A47425 serotonin receptor 5HT-7 - rat
392 M--------------------------------------------PHLLSGFLEVTA---
393 ------------------SPAPTWDAPPDNVSGCGEQINYGRVEKVVIGSILTLITLLTI
394 AGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHF
395 FCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI
396 -TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPMSVML
397 FMYYQIYKAARKSAAKHKFP--------------GFPRVQPESVISLNGVVKLQKEVEE-
398 ------------------------------------------------------------
399 ---------------------------CANLSRLLKHERKNISIFKREQKAATTLGIIVG
400 AFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTT
401 YRSLL-----QCQYRNINRKLSAAGMH-EALKLAERPERSEFVLQNSDHCGKKGHDT---
402 ------------------------------------------------------------
403 ---------------
404 >    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
405 MDVLSPGQGNNTTSPPAPF-----------------------------------------
406 ------------------ETGGNTTGIS----------DVTVSYQVITSLLLGTLIFCAV
407 LGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQV
408 TCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI
409 -SIPPML-GWRTP---EDRSDPDACTISKDH----------GYTIYSTFGAFYIPLLLML
410 VLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKS---------VNGESGSRNW
411 RLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFER
412 KNERNA-------------------------------EAKRKMALARERKTVKTLGIIMG
413 TFILCWLPFFIVALVLPF-CESSCH-MPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNA
414 FKKII-----KCKFCRQ-------------------------------------------
415 ------------------------------------------------------------
416 ---------------
417 >    33=p A35181 serotonin receptor class 1A - rat
418 MDVFSFGQGNNTTASQEPF-----------------------------------------
419 ------------------GTGGNVTSIS----------DVTFSYQVITSLLLGTLIFCAV
420 LGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQV
421 TCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI
422 -SIPPML-GWRTP---EDRSDPDACTISKDH----------GYTIYSTFGAFYIPLLLML
423 VLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSSAPPPKKS---------LNGQPGSGDW
424 RRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAPACLER
425 KNERNA-------------------------------EAKRKMALARERKTVKTLGIIMG
426 TFILCWLPFFIVALVLPF-CESSCH-MPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNA
427 FKKII-----KCKFCRR-------------------------------------------
428 ------------------------------------------------------------
429 ---------------
430 >    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
431 MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
432 HSSRSRDNASANDTSATNMTDDRYWSLT----------VYSHEHLVLTSVILGLFVLCCI
433 IGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSE
434 VCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI
435 -SIPPLF-GWRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAFYLPMLVMM
436 IIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKK
437 KRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEE
438 ASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLAIITG
439 AFLICWLPFFIIALIGPF--VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSA
440 FQKIL-----FGKYRRGHR-----------------------------------------
441 ------------------------------------------------------------
442 ---------------
443 >    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
444 MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
445 HSSRSRDNASANDTSATNMTDDRYWSLT----------VYSHEHLVLTSVILGLFVLCCI
446 IGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSE
447 VCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI
448 -SIPPLF-GWRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAFYLPMLVMM
449 IIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKK
450 KRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEE
451 ASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLAIITG
452 AFLICWLPFFIIALIGPF--VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSA
453 FQKIL-----FGKYRRGHR-----------------------------------------
454 ------------------------------------------------------------
455 ---------------
456 >    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
457 MEGAEGQEELDWEALYLRLPLQNCSWNSTGWEPNWNVTV---------------------
458 ------------------VPNTTWWQASAPF-----DTPAALVRAAAKAVVLGLLILATV
459 VGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPE
460 LCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV
461 -CIAQLL-GWKDPDWNQRVSEDLRCVVSQDV----------GYQIFATASSFYVPVLIIL
462 ILYWRIYQTARKRIRRRRGATARGGV--------GPPPVPAGGALVAGGGSGG-------
463 -----------------------------IAAAVVAVIGRPLPTISETTTTGFTNVSSNN
464 TSPE--KQSCANGLEADPPTTGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITG
465 AFVACWLPFFVLAILVPT---CDCE-VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHA
466 FQRLL-----CGRRVRRRRAPQ--------------------------------------
467 ------------------------------------------------------------
468 ---------------