testsrc/testdata/TO1381L.aln

   1 CLUSTAL 2.0.12 multiple sequence alignment\r
   2 \r
   3 \r
   4 Foobar_dundeefriendsa-sdfkjslk      MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL\r
   5 Foobar                              -----------------------------------MGDTTAGEMAVQRGL\r
   6 dundeefriendssdfsdfjsadflkajds      -MTADGPRELLQLRAAVRHRPQDVAWLMLADAELGMGDTTAGEMAVQRGL\r
   7                                                                        ***************\r
   8 \r
   9 Foobar_dundeefriendsa-sdfkjslk      ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA\r
  10 Foobar                              ALH----------------QQRHAEAAVLLQQASDAAPEHPGIALWL-HA\r
  11 dundeefriendssdfsdfjsadflkajds      ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA\r
  12                                     ***                **************************** **\r
  13 \r
  14 Foobar_dundeefriendsa-sdfkjslk      LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ\r
  15 Foobar                              LEDAGQAEAAAA-YTRAHQLLPEEPYITAQLLN-----------------\r
  16 dundeefriendssdfsdfjsadflkajds      LED--------------HQLLPEEPYITAQLDVLSAQVR-----------\r
  17                                     ***              **************                   \r
  18 \r
  19 Foobar_dundeefriendsa-sdfkjslk      VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV\r
  20 Foobar                              ---AVAQGVGAVEPFAFLSEDASAAE--------------SVRPLAPTRV\r
  21 dundeefriendssdfsdfjsadflkajds      --AAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV\r
  22                                        ***********************              **********\r
  23 \r
  24 Foobar_dundeefriendsa-sdfkjslk      RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
  25 Foobar                              RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
  26 dundeefriendssdfsdfjsadflkajds      RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
  27                                     **************************************************\r
  28 \r
  29 Foobar_dundeefriendsa-sdfkjslk      STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  30 Foobar                              STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  31 dundeefriendssdfsdfjsadflkajds      STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
  32                                     **************************************************\r
  33 \r
  34 Foobar_dundeefriendsa-sdfkjslk      FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
  35 Foobar                              FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
  36 dundeefriendssdfsdfjsadflkajds      FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
  37                                     **************************************************\r
  38 \r
  39 Foobar_dundeefriendsa-sdfkjslk      GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
  40 Foobar                              GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
  41 dundeefriendssdfsdfjsadflkajds      GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
  42                                     **************************************************\r
  43 \r
  44 Foobar_dundeefriendsa-sdfkjslk      LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
  45 Foobar                              LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
  46 dundeefriendssdfsdfjsadflkajds      LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
  47                                     **************************************************\r
  48 \r
  49 Foobar_dundeefriendsa-sdfkjslk      YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
  50 Foobar                              YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
  51 dundeefriendssdfsdfjsadflkajds      YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
  52                                     **************************************************\r
  53 \r
  54 Foobar_dundeefriendsa-sdfkjslk      LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESGVFEMDGFAD\r
  55 Foobar                              LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESGVFEMDGFAD\r
  56 dundeefriendssdfsdfjsadflkajds      LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESI---------\r
  57                                     ****************************************          \r
  58 \r
  59 Foobar_dundeefriendsa-sdfkjslk      DFGALLQALARRHGWLGI\r
  60 Foobar                              DFGALLQALARRHGWLGI\r
  61 dundeefriendssdfsdfjsadflkajds      ------------------\r
  62                                                       \r