WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / Cluster / distance_matrix.h

diff --git a/binaries/src/ViennaRNA/Cluster/distance_matrix.h b/binaries/src/ViennaRNA/Cluster/distance_matrix.h
new file mode 100644 (file)
index 0000000..896598c
--- /dev/null
+++ b/binaries/src/ViennaRNA/Cluster/distance_matrix.h
@@ -0,0 +1,14 @@
+extern   float **read_distance_matrix(char type[]);
+extern   char  **read_sequence_list(int *n_of_seqs,char *mask);
+extern   float **Hamming_Distance_Matrix(char **seqs, int n_of_seqs);
+extern   float **StrEdit_SimpleDistMatrix(char **seqs, int n_of_seqs);
+extern   float **StrEdit_GotohDistMatrix(char **seqs, int n_of_seqs);
+extern   char   *get_taxon_label(int whoami);
+extern   void    free_distance_matrix(float **x);
+extern   void    printf_distance_matrix(float **x);
+extern   void    printf_taxa_list(void);
+extern   float   StrEdit_SimpleDist(char *str1, char *str2);
+extern   float   StrEdit_GotohDist(char *str1, char *str2);
+extern   void    Set_StrEdit_CostMatrix(char type);
+extern   void    Set_StrEdit_GapCosts(float per_digit, float per_gap);
+