WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / H / PKplex.h

diff --git a/binaries/src/ViennaRNA/H/PKplex.h b/binaries/src/ViennaRNA/H/PKplex.h
new file mode 100644 (file)
index 0000000..60a2144
--- /dev/null
+++ b/binaries/src/ViennaRNA/H/PKplex.h
@@ -0,0 +1,25 @@
+#ifndef PKPLEX_H
+#define PKPLEX_H
+
+#include "data_structures.h"
+
+extern dupVar *PlexHits;
+extern int    PlexHitsArrayLength;
+extern int    NumberOfHits;
+extern int    verbose;
+
+
+/**
+ *  \brief 
+ */
+dupVar  **PKLduplexfold_XS( const char *s1,
+                            int **access_s1,
+                            const int threshold,
+                            const int alignment_length,
+                            const int delta);
+
+int     arraySize(duplexT **array);
+
+void    freeDuplexT(duplexT **array);
+
+#endif