WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / H / ProfileAln.h

diff --git a/binaries/src/ViennaRNA/H/ProfileAln.h b/binaries/src/ViennaRNA/H/ProfileAln.h
new file mode 100644 (file)
index 0000000..1744ffa
--- /dev/null
+++ b/binaries/src/ViennaRNA/H/ProfileAln.h
@@ -0,0 +1,14 @@
+#ifndef __VIENNA_RNA_PACKAGE_PROFILEALN_H__
+#define __VIENNA_RNA_PACKAGE_PROFILEALN_H__
+
+float profile_aln(const float *T1,
+                  const char *seq1,
+                  const float *T2,
+                  const char *seq2);
+
+int set_paln_params(double gap_open,
+                    double gap_ext,
+                    double seqweight,
+                    int free_ends);
+
+#endif