WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / H / duplex.h

diff --git a/binaries/src/ViennaRNA/H/duplex.h b/binaries/src/ViennaRNA/H/duplex.h
new file mode 100644 (file)
index 0000000..aa71ade
--- /dev/null
+++ b/binaries/src/ViennaRNA/H/duplex.h
@@ -0,0 +1,28 @@
+#ifndef __VIENNA_RNA_PACKAGE_DUPLEX_H__
+#define __VIENNA_RNA_PACKAGE_DUPLEX_H__
+
+#include "data_structures.h"
+
+/**
+ *  \file duplex.h
+ *  \brief Duplex folding function declarations...
+ */
+
+
+duplexT duplexfold( const char *s1,
+                    const char *s2);
+
+duplexT *duplex_subopt( const char *s1,
+                        const char *s2,
+                        int delta,
+                        int w);
+
+duplexT aliduplexfold(const char *s1[],
+                      const char *s2[]);
+
+duplexT *aliduplex_subopt(const char *s1[],
+                          const char *s2[],
+                          int delta,
+                          int w);
+
+#endif