WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / H / move_set.h

diff --git a/binaries/src/ViennaRNA/H/move_set.h b/binaries/src/ViennaRNA/H/move_set.h
new file mode 100644 (file)
index 0000000..3c704f3
--- /dev/null
+++ b/binaries/src/ViennaRNA/H/move_set.h
@@ -0,0 +1,63 @@
+#ifndef __MOVE_SET_H
+#define __MOVE_SET_H
+
+/* used data structure*/
+typedef struct _struct_en{
+  int energy;        /* energy in 10kcal/mol*/
+  short *structure;  /* structure in energy_of_move format*/
+} struct_en;
+
+/* prints structure*/
+void print_stren(FILE *out, struct_en *str);
+void print_str(FILE *out, short *str);
+
+/* copying functions*/
+void copy_arr(short *dest, short *src); /*just copy*/
+short *allocopy(short *src);            /*copy and make space*/
+
+/* walking methods (verbose_lvl 0-2, shifts = use shift moves? noLP = no lone pairs? (not compatible with shifts))
+    input:    seq - sequence
+              ptable - structure encoded with make_pair_table() from pair_mat.h
+              s, s1 - sequence encoded with encode_sequence from pair_mat.h
+    methods:  deepest - lowest energy structure is used
+              first - first found lower energy structure is used
+              rand - random lower energy structure is used
+    returns local minima structure in ptable and its energy in 10kcal/mol as output */
+
+int move_deepest( char *seq,
+                  short *ptable,
+                  short *s,
+                  short *s1,
+                  int verbosity_level,
+                  int shifts,
+                  int noLP);
+int move_first( char *seq,
+                short *ptable,
+                short *s,
+                short *s1,
+                int verbosity_level,
+                int shifts,
+                int noLP);
+int move_rand(  char *seq,
+                short *ptable,
+                short *s,
+                short *s1,
+                int verbosity_level);
+
+
+/* browse_neighbours and do funct function on each of them (used mainly for user specified flooding)
+    input:    seq - sequence
+              ptable - structure encoded with make_pair_table() from pair_mat.h
+              s, s1 - sequence encoded with encode_sequence from pair_mat.h
+              funct - function (moved structure, current structure (or altered by funct)) to do with every structure in neigbourhood
+    returns energy of the structure funct sets as second argument*/
+int browse_neighs( char *seq,
+                   short *ptable,
+                   short *s,
+                   short *s1,
+                   int verbosity_level,
+                   int shifts,
+                   int noLP,
+                   int (*funct) (struct_en*, struct_en*));
+
+#endif