WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / H / stringdist.h

diff --git a/binaries/src/ViennaRNA/H/stringdist.h b/binaries/src/ViennaRNA/H/stringdist.h
new file mode 100644 (file)
index 0000000..6a5c820
--- /dev/null
+++ b/binaries/src/ViennaRNA/H/stringdist.h
@@ -0,0 +1,30 @@
+#ifndef __VIENNA_RNA_PACKAGE_STRING_DIST_H__
+#define __VIENNA_RNA_PACKAGE_STRING_DIST_H__
+
+/**
+ *  \file stringdist.h
+ *  \brief Functions for String Alignment
+ */
+
+#include "dist_vars.h"
+
+
+/**
+ *  \brief Convert a structure into a format suitable for string_edit_distance().
+ * 
+ *  \param string
+ *  \return
+ */
+swString *Make_swString(char *string);
+
+/**
+ *  \brief Calculate the string edit distance of T1 and T2.
+ * 
+ *  \param  T1
+ *  \param  T2
+ *  \return
+ */
+float     string_edit_distance( swString *T1,
+                                swString *T2);
+
+#endif