WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / Kinfold / cache_util.h

diff --git a/binaries/src/ViennaRNA/Kinfold/cache_util.h b/binaries/src/ViennaRNA/Kinfold/cache_util.h
new file mode 100644 (file)
index 0000000..adb8de2
--- /dev/null
+++ b/binaries/src/ViennaRNA/Kinfold/cache_util.h
@@ -0,0 +1,33 @@
+/*
+  Last changed Time-stamp: <2006-10-03 09:37:34 xtof>
+  c  Christoph Flamm and Ivo L Hofacker
+  {xtof,ivo}@tbi.univie.ac.at
+  Kinfold: $Name:  $
+  $Id: cache_util.h,v 1.2 2006/10/04 12:45:12 xtof Exp $
+*/
+
+#ifndef CACHE_UTIL_H
+#define CACHE_UTIL_H
+
+#ifdef __GNUC__
+#define UNUSED __attribute__ ((unused))
+#else
+#define UNUSED
+#endif
+
+typedef struct {
+  char *structure;
+  int top;           /* number of neighbors */
+  int lmin;          /* is a local minimum ? */
+  double flux;       /* sum of rates */
+  double energy;     /* energy of this structure */
+  short *neighbors;  
+  float *rates;
+  double *energies;
+} cache_entry;
+
+extern cache_entry *lookup_cache (char *x);
+extern int write_cache (cache_entry *x);
+void kill_cache(void);
+
+#endif