WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / Kinfold / configure.ac

diff --git a/binaries/src/ViennaRNA/Kinfold/configure.ac b/binaries/src/ViennaRNA/Kinfold/configure.ac
new file mode 100644 (file)
index 0000000..d172e30
--- /dev/null
+++ b/binaries/src/ViennaRNA/Kinfold/configure.ac
@@ -0,0 +1,65 @@
+#                                               -*- Autoconf -*-
+# Process this file with autoconf to produce a configure script.
+
+AC_PREREQ(2.61)
+
+AC_INIT([kinfold], [1.3], [rna@tbi.univie.ac.at], [Kinfold])
+AC_CONFIG_SRCDIR([cache_util.h])
+
+AM_SILENT_RULES([yes])
+dnl Every other copy of the package version number gets its value from here
+AM_INIT_AUTOMAKE([1.11])
+
+dnl configure options
+AM_WITH_DMALLOC
+
+dnl Checks for programs.
+AC_PROG_CC
+dnl AC_PROG_MAKE_SET
+
+dnl create a config.h file (Automake will add -DHAVE_CONFIG_H)
+AC_CONFIG_HEADERS(config.h)
+
+AC_SUBST(VERSION)
+
+ISODATE=`date +%Y-%m-%d`
+AC_SUBST(ISODATE)
+
+AC_CANONICAL_HOST
+
+dnl Checks for library functions.
+AC_CHECK_FUNCS([strdup memset strchr])
+
+AC_ARG_WITH(ViennaRNA-include,
+  [ --with-ViennaRNA-include   where to search for ViennaRNA header files],
+  ac_VRNA_includes="$withval",
+  )
+
+AC_ARG_WITH(ViennaRNA-lib,
+  [ --with-ViennaRNA-lib       where to search for libRNA.a],
+  ac_VRNA_lib="$withval",
+  )
+AC_OPENMP
+
+AC_PATH_VRNA
+
+dnl Checks for header files.
+AC_HEADER_STDC
+AC_CHECK_HEADERS(stdlib.h string.h strings.h unistd.h fold.h)
+
+dnl Checks for libraries.
+dnl Replace `main' with a function in -lm:
+AC_CHECK_LIB(m, exp)
+AC_FUNC_MALLOC
+AC_FUNC_REALLOC
+
+dnl checking for -lRNA will fail if both are built simultaneously
+dnl AC_CHECK_LIB(RNA, fold)
+LIBS=["-lRNA ${LIBS}"]
+
+dnl Checks for typedefs, structures, and compiler characteristics.
+AC_C_CONST
+
+AC_CONFIG_FILES([Example/Makefile Makefile])
+
+AC_OUTPUT