WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / Kinfold / globals.h

diff --git a/binaries/src/ViennaRNA/Kinfold/globals.h b/binaries/src/ViennaRNA/Kinfold/globals.h
new file mode 100644 (file)
index 0000000..8f1c44b
--- /dev/null
+++ b/binaries/src/ViennaRNA/Kinfold/globals.h
@@ -0,0 +1,79 @@
+/*
+  Last changed Time-stamp: <2006-10-03 10:53:27 xtof>
+  c  Christoph Flamm and Ivo L Hofacker
+  {xtof,ivo}@tbi.univie.ac.at
+  Kinfold: $Name:  $
+  $Id: globals.h,v 1.3 2006/10/04 12:45:13 xtof Exp $
+*/
+
+#ifndef GLOBDEFS_H
+#define GLOBDEFS_H
+
+#ifdef __GNUC__
+#define UNUSED __attribute__ ((unused))
+#else
+#define UNUSED
+#endif
+
+typedef struct _GlobVars {
+  int len;
+  int num;
+  int maxS;
+  int steps;
+  float cut;
+  float Temp;
+  float startE;
+  float stopE;
+  float currE;
+  double grow;
+  int    glen;
+  double time;
+  double phi;
+  double simTime;
+} GlobVars;
+
+typedef struct _GlobArrays {
+  char *ParamFile;
+  char *ProgramName;
+  char *BaseName;      /* output file basename */
+  char *farbe;         /* sequence */
+  char *farbe_full;    /* full sequence (for chain growth simulation) */
+  char *startform;     /* start structure */
+  char **stopform;     /* stop structure(s) */
+  char *currform;      /* current structure */
+  char *prevform;      /* current structure of previous time step */
+  float *sE;           /* energy(s) of stop structure(s) */
+  double phi_bounds[3];   /* phi_min, phi_inc, phi_max */
+  unsigned short subi[3]; /* seeds for random-number-generator */
+} GlobArrays;
+
+typedef struct _GlobToogles {
+  int Par;
+  int seed;
+  int dangle;
+  int logML;
+  int noLP;
+  int noShift;
+  int start;
+  int stop;
+  int silent;
+  int phi;
+  int lmin;
+  int fpt;
+  int mc;
+  int verbose;
+} GlobToggles;
+
+void decode_switches(int argc, char *argv[]);
+void clean_up_globals(void);
+void log_prog_params(FILE *FP);
+void log_start_stop(FILE *FP);
+
+GlobVars GSV;
+GlobArrays GAV;
+GlobToggles GTV;
+
+#endif
+
+
+/* End of file */