--- /dev/null
+
+
+if WITH_LIBSVM
+ RNALfold_LINK = ${CXXLD} \
+ $(AM_CXXFLAGS) $(CXXFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
+else
+ RNALfold_LINK = ${CCLD} \
+ $(AM_CFLAGS) $(CFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
+endif
+
+
+bin_PROGRAMS = RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse \
+ RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex \
+ RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold \
+ RNAparconv RNAPKplex RNAplex RNAsnoop
+
+LDADD = $(OPENMP_CFLAGS) ../lib/libRNA.a -lm
+
+AM_CFLAGS = $(OPENMP_CFLAGS)
+
+AM_CPPFLAGS = -I$(srcdir)/../H -I$(srcdir)/../lib
+
+GENGETOPT_CMDL = RNAfold_cmdl.c RNAfold_cmdl.h\
+ RNAalifold_cmdl.c RNAalifold_cmdl.h\
+ RNAcofold_cmdl.c RNAcofold_cmdl.h\
+ RNAup_cmdl.c RNAup_cmdl.h\
+ RNALfold_cmdl.c RNALfold_cmdl.h\
+ RNALalifold_cmdl.c RNALalifold_cmdl.h\
+ RNAplfold_cmdl.c RNAplfold_cmdl.h\
+ RNAduplex_cmdl.c RNAduplex_cmdl.h\
+ RNAaliduplex_cmdl.c RNAaliduplex_cmdl.h\
+ RNAeval_cmdl.c RNAeval_cmdl.h\
+ RNAheat_cmdl.c RNAheat_cmdl.h\
+ RNAsubopt_cmdl.c RNAsubopt_cmdl.h\
+ RNA2Dfold_cmdl.c RNA2Dfold_cmdl.h\
+ RNAparconv_cmdl.c RNAparconv_cmdl.h\
+ RNAinverse_cmdl.c RNAinverse_cmdl.h\
+ RNApaln_cmdl.c RNApaln_cmdl.h\
+ RNAplot_cmdl.c RNAplot_cmdl.h\
+ RNAPKplex_cmdl.c RNAPKplex_cmdl.h\
+ RNAplex_cmdl.c RNAplex_cmdl.h\
+ RNAsnoop_cmdl.c RNAsnoop_cmdl.h\
+ RNAdistance_cmdl.c RNAdistance_cmdl.h\
+ RNApdist_cmdl.c RNApdist_cmdl.h
+
+GENGETOPT_FILES = RNAfold.ggo RNAalifold.ggo RNAcofold.ggo\
+ RNAup.ggo RNALfold.ggo RNALalifold.ggo\
+ RNAplfold.ggo RNAduplex.ggo RNAaliduplex.ggo\
+ RNAeval.ggo RNAheat.ggo RNAsubopt.ggo RNA2Dfold.ggo\
+ RNAparconv.ggo RNAinverse.ggo RNApaln.ggo RNAplot.ggo\
+ RNAPKplex.ggo RNAplex.ggo RNAsnoop.ggo RNAdistance.ggo\
+ RNApdist.ggo
+
+EXTRA_DIST = ${GENGETOPT_FILES} ${GENGETOPT_CMDL}
+
+# remove all generated man pages
+maintainer-clean-local:
+ rm -rf $(GENGETOPT_CMDL)
+
+
+RNAfold.c: RNAfold_cmdl.h
+
+RNAfold_cmdl.h RNAfold_cmdl.c: RNAfold.ggo
+ gengetopt -i RNAfold.ggo
+
+RNAfold_SOURCES=RNAfold_cmdl.c RNAfold.c
+
+RNAsubopt.c: RNAsubopt_cmdl.h
+
+RNAsubopt_cmdl.h RNAsubopt_cmdl.c: RNAsubopt.ggo
+ gengetopt -i RNAsubopt.ggo
+
+RNAsubopt_SOURCES=RNAsubopt_cmdl.c RNAsubopt.c
+
+
+RNAalifold.c: RNAalifold_cmdl.h
+
+RNAalifold_cmdl.h RNAalifold_cmdl.c: RNAalifold.ggo
+ gengetopt -i RNAalifold.ggo
+
+RNAalifold_SOURCES=RNAalifold_cmdl.c RNAalifold.c
+
+
+RNAcofold.c: RNAcofold_cmdl.h
+
+RNAcofold_cmdl.h RNAcofold_cmdl.c: RNAcofold.ggo
+ gengetopt -i RNAcofold.ggo
+
+RNAcofold_SOURCES=RNAcofold_cmdl.c RNAcofold.c
+
+RNAup.c: RNAup_cmdl.h
+
+RNAup_cmdl.h RNAup_cmdl.c: RNAup.ggo
+ gengetopt -i RNAup.ggo
+
+RNAup_SOURCES=RNAup_cmdl.c RNAup.c
+
+
+RNALfold.c: RNALfold_cmdl.h
+
+RNALfold_cmdl.h RNALfold_cmdl.c: RNALfold.ggo
+ gengetopt -i RNALfold.ggo
+
+RNALfold_SOURCES=RNALfold_cmdl.c RNALfold.c
+
+RNALalifold.c: RNALalifold_cmdl.h
+
+RNALalifold_cmdl.h RNALalifold_cmdl.c: RNALalifold.ggo
+ gengetopt -i RNALalifold.ggo
+
+RNALalifold_SOURCES=RNALalifold_cmdl.c RNALalifold.c
+
+
+RNAplfold.c: RNAplfold_cmdl.h
+
+RNAplfold_cmdl.h RNAplfold_cmdl.c: RNAplfold.ggo
+ gengetopt -i RNAplfold.ggo
+
+RNAplfold_SOURCES=RNAplfold_cmdl.c RNAplfold.c
+
+
+RNAduplex.c: RNAduplex_cmdl.h
+
+RNAduplex_cmdl.h RNAduplex_cmdl.c: RNAduplex.ggo
+ gengetopt -i RNAduplex.ggo
+
+RNAduplex_SOURCES=RNAduplex_cmdl.c RNAduplex.c
+
+
+RNAaliduplex.c: RNAaliduplex_cmdl.h
+
+RNAaliduplex_cmdl.h RNAaliduplex_cmdl.c: RNAaliduplex.ggo
+ gengetopt -i RNAaliduplex.ggo
+
+RNAaliduplex_SOURCES=RNAaliduplex_cmdl.c RNAaliduplex.c
+
+RNAeval.c: RNAeval_cmdl.h
+
+RNAeval_cmdl.h RNAeval_cmdl.c: RNAeval.ggo
+ gengetopt -i RNAeval.ggo
+
+RNAeval_SOURCES=RNAeval_cmdl.c RNAeval.c
+
+RNAheat.c: RNAheat_cmdl.h
+
+RNAheat_cmdl.h RNAheat_cmdl.c: RNAheat.ggo
+ gengetopt -i RNAheat.ggo
+
+RNAheat_SOURCES=RNAheat_cmdl.c RNAheat.c
+
+RNA2Dfold.c: RNA2Dfold_cmdl.h
+
+RNA2Dfold_cmdl.h RNA2Dfold_cmdl.c: RNA2Dfold.ggo
+ gengetopt -i RNA2Dfold.ggo
+
+RNA2Dfold_SOURCES=RNA2Dfold_cmdl.c RNA2Dfold.c
+
+RNAparconv.c: RNAparconv_cmdl.h
+
+RNAparconv_cmdl.h RNAparconv_cmdl.c: RNAparconv.ggo
+ gengetopt -i RNAparconv.ggo
+
+RNAparconv_SOURCES=RNAparconv_cmdl.c RNAparconv.c
+
+RNAinverse.c: RNAinverse_cmdl.h
+
+RNAinverse_cmdl.h RNAinverse_cmdl.c: RNAinverse.ggo
+ gengetopt -i RNAinverse.ggo
+
+RNAinverse_SOURCES=RNAinverse_cmdl.c RNAinverse.c
+
+RNApaln.c: RNApaln_cmdl.h
+
+RNApaln_cmdl.h RNApaln_cmdl.c: RNApaln.ggo
+ gengetopt -i RNApaln.ggo
+
+RNApaln_SOURCES=RNApaln_cmdl.c RNApaln.c
+
+RNAplot.c: RNAplot_cmdl.h
+
+RNAplot_cmdl.h RNAplot_cmdl.c: RNAplot.ggo
+ gengetopt -i RNAplot.ggo
+
+RNAplot_SOURCES=RNAplot_cmdl.c RNAplot.c
+
+RNAPKplex.c: RNAPKplex_cmdl.h
+
+RNAPKplex_cmdl.h RNAPKplex_cmdl.c: RNAPKplex.ggo
+ gengetopt -i RNAPKplex.ggo
+
+RNAPKplex_SOURCES=RNAPKplex_cmdl.c RNAPKplex.c
+
+RNAplex.c: RNAplex_cmdl.h
+
+RNAplex_cmdl.h RNAplex_cmdl.c: RNAplex.ggo
+ gengetopt -i RNAplex.ggo
+
+RNAplex_SOURCES=RNAplex_cmdl.c RNAplex.c
+
+RNAsnoop.c: RNAsnoop_cmdl.h
+
+RNAsnoop_cmdl.h RNAsnoop_cmdl.c: RNAsnoop.ggo
+ gengetopt -i RNAsnoop.ggo
+
+RNAsnoop_SOURCES=RNAsnoop_cmdl.c RNAsnoop.c
+
+RNAdistance.c: RNAdistance_cmdl.h
+
+RNAdistance_cmdl.h RNAdistance_cmdl.c: RNAdistance.ggo
+ gengetopt -i RNAdistance.ggo
+
+RNAdistance_SOURCES=RNAdistance_cmdl.c RNAdistance.c
+
+RNApdist.c: RNApdist_cmdl.h
+
+RNApdist_cmdl.h RNApdist_cmdl.c: RNApdist.ggo
+ gengetopt -i RNApdist.ggo
+
+RNApdist_SOURCES=RNApdist_cmdl.c RNApdist.c
git://source.jalview.org / jabaws.git / blobdiff