WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / configure.ac

diff --git a/binaries/src/ViennaRNA/RNAforester/configure.ac b/binaries/src/ViennaRNA/RNAforester/configure.ac
new file mode 100644 (file)
index 0000000..f99c831
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/configure.ac
@@ -0,0 +1,101 @@
+dnl Process this file with autoconf to produce a configure script.
+AC_REVISION($Revision: 1.13 $)
+AC_INIT(RNAforester,1.5,mhoechsm@techfak.uni-bielefeld.de,RNAforester)
+AC_PREREQ([2.59])
+
+AM_SILENT_RULES([yes])
+AM_INIT_AUTOMAKE([1.11])
+
+dnl create a config.h file (Automake will add -DHAVE_CONFIG_H)
+AM_CONFIG_HEADER(config.h)
+               
+dnl Checks for programs.
+AC_PROG_CXX
+AC_PROG_CC
+AC_LANG(C++)
+
+dnl Checks for libraries.
+dnl AC_CHECK_LIB(g2,g2_open_vd,,AC_MSG_WARN(Compiling without support for graphical output. Install the g2 library that comes with the RNAforester distribution or download the latest version at http://g2.sourceforge.net/))
+
+AC_OPENMP
+
+AC_ARG_WITH(ViennaRNA-lib,
+  [--with-ViennaRNA-lib        where to search for libRNA.a],
+  [LIBS=["$withval/libRNA.a ${LIBS}"] && AC_DEFINE(HAVE_LIBRNA,1,Define to 1 if you have the `RNA' library (-lRNA).)
+  LDFLAGS="-L$withval -R$withval ${LDFLAGS}"],
+  LDFLAGS="-L../../lib -L../../ViennaRNA ${LDFLAGS} ${OPENMP_CXXFLAGS}" 
+  if test -r "../lib/fold.c"; then
+    AC_DEFINE(HAVE_LIBRNA)
+    LIBS=["-lRNA ${LIBS}"]
+    AC_MSG_RESULT([using (to be built) libRNA.a in ../lib])
+  else
+    if test -r "../ViennaRNA/fold.c"; then
+      AC_DEFINE(HAVE_LIBRNA)
+      LIBS=["-lRNA ${LIBS}"]
+      AC_MSG_RESULT([using (to be built) libRNA.a in ../ViennaRNA])
+    fi
+  fi
+ ) 
+dnl AC_CHECK_LIB(RNA, fold,,AC_MSG_WARN(Vienna RNA library libRNA.a was not found. RNAforester will be compiled without the structure prediction option -p and graphical output))
+
+AC_ARG_WITH([xml2-lib],
+            [AS_HELP_STRING([--with-xml2-lib],[where to search for libxml2.so])],
+           [LDFLAGS="-L$withval/lib -R$withval/lib ${LDFLAGS}"
+           AC_CHECK_LIB([xml2],[main],AC_DEFINE([HAVE_LIBXML2],[1],[Define if you have libxml2]),AC_MSG_FAILURE([--with-xml2-lib was given but test for libxml2 failed]))
+           LIBS="-lxml2 ${LIBS}"
+           CPPFLAGS="-I$withval/include/libxml2/ ${CPPFLAGS}"],
+           [])
+
+AC_ARG_WITH([xmlplusplus-lib],
+            [AS_HELP_STRING([--with-xmlplusplus-lib],[where to search for libxml++-1.0.so])],
+           [LDFLAGS="-L$withval/lib -R$withval/lib ${LDFLAGS}"
+           AC_CHECK_LIB([xml++-1.0],[main],AC_DEFINE([HAVE_LIBXMLPLUSPLUS],[1],[Define if you have libxml++-1.0]),[AC_MSG_FAILURE([--with-xmlplusplus-lib was given but test for libxml++-1.0 failed])],[])
+           LIBS="-lxml++-1.0 ${LIBS}"
+           CPPFLAGS="-I$withval/include/libxml++-1.0/ ${CPPFLAGS}"],
+           [])
+
+save_CPPFLAGS=$CPPFLAGS        
+CPPFLAGS=["-Ig2-0.70/src/ ${CPPFLAGS}"]
+
+dnl AC_CHECK_LIB(gd,main,,)
+                 
+dnl Checks for header files.
+AC_HEADER_STDC
+AC_CHECK_HEADER(g2.h,AC_DEFINE(HAVE_LIBG2,1,Define to 1 if you have the `g2' library (-lg2).),AC_MSG_WARN(Compiling without support for graphical output. Install the g2 library that comes with the RNAforester distribution or download the latest version at http://g2.sourceforge.net/))
+dnl AC_CHECK_HEADER(g2_PS.h,,AC_MSG_WARN(Compiling without support for graphical output. Install the g2 library that comes with the RNAforester distribution or download the latest version at http://g2.sourceforge.net/))
+
+dnl Checks for typedefs, structures, and compiler characteristics.
+AC_C_CONST
+AC_C_INLINE
+AC_TYPE_SIZE_T
+
+CPPFLAGS="$save_CPPFLAGS -I../g2-0.70/include/ "
+LDFLAGS=["-L../g2-0.70 ${LDFLAGS}"]
+
+if ${HAVE_LIBG2}; then
+  LIBS=["-lg2 ${LIBS}"]
+fi     
+                                                                                       
+AC_SUBST(CXX)
+AC_SUBST(CPPFLAGS)
+AC_SUBST(LIBS)
+AC_SUBST(LDFLAGS)
+
+dnl Checks for library functions.
+
+AC_CONFIG_SUBDIRS(g2-0.70)
+AC_OUTPUT(Makefile src/Makefile man/Makefile)
+
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