WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / src / fold.h

diff --git a/binaries/src/ViennaRNA/RNAforester/src/fold.h b/binaries/src/ViennaRNA/RNAforester/src/fold.h
new file mode 100644 (file)
index 0000000..703aa2d
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/src/fold.h
@@ -0,0 +1,8 @@
+/* function from fold.c */
+extern float  fold(const char *sequence, char *structure); 
+/* calculate mfe-structure of sequence */
+extern float  energy_of_struct(const char *string, const char *structure);
+/* calculate energy of string on structure */
+extern void   free_arrays(void);           /* free arrays for mfe folding */
+extern void   initialize_fold(int length); /* allocate arrays for folding */
+extern void   update_fold_params(void);    /* recalculate parameters */