WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / src / match.defs

diff --git a/binaries/src/ViennaRNA/RNAforester/src/match.defs b/binaries/src/ViennaRNA/RNAforester/src/match.defs
new file mode 100644 (file)
index 0000000..0e194e4
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/src/match.defs
@@ -0,0 +1,40 @@
+#define        MAXWT  1000000
+
+#define NULL 0
+
+
+/* the number of the blossom entered by edge e */
+#define BEND(e) (BASE[END[e]])
+
+/* the blossom matched with v's blossom */
+#define BMATE(v) (BASE[END[MATE[v]]])
+
+/* the blossom entered by the edge that links v's blossom */
+#define BLINK(v) (BASE[END[LINK[v]]])
+
+/* the edge e with it's direction reversed */
+#define OPPEDGE(e) (((e - U) % 2 == 0) ? (e - 1) : (e + 1))
+
+/* the slack of edge e */
+#define SLACK(e) (Y[END[e]] + Y[END[OPPEDGE(e)]] - WEIGHT[e])
+
+
+/* Global variables */
+static int *A,*END,*WEIGHT,*NEXTPAIR;
+static int *MATE,*LINK,*BASE,*NEXTVTX,*LASTVTX,*Y,*NEXT_D,*NEXTEDGE;
+
+static int LAST_D, DELTA;
+
+static int LASTEDGE[3];
+
+static int DUMMYVERTEX, DUMMYEDGE;
+static int U, V;
+
+static int newbase, /* oldbase, */ nextbase, stopscan, pairpoint;
+static int neighbor, nextpoint, newlast;
+static int /* newmate, oldmate,*/ oldfirst, /* firstmate, */ secondmate;
+static int f, nextedge, nexte, nextu;
+
+static int v,i,e;
+
+