WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / src / part_func.h

diff --git a/binaries/src/ViennaRNA/RNAforester/src/part_func.h b/binaries/src/ViennaRNA/RNAforester/src/part_func.h
new file mode 100644 (file)
index 0000000..7973dc2
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/src/part_func.h
@@ -0,0 +1,13 @@
+extern "C"
+{
+
+/* functions from part_func.c */
+float  pf_fold(char *sequence, char *structure);
+/* calculate partition function and base pair probabilities */
+void   init_pf_fold(int length);    /* allocate space for pf_fold() */
+void   free_pf_arrays(void);        /* free arrays from pf_fold() */
+void   update_pf_params(int length); /*recalculate energy parameters */
+char   bppm_symbol(float *x);   /* string representation of structure */
+double mean_bp_dist(int length); /* mean pair distance of ensemble */
+
+}