WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / src / rna_alphabet.cpp

diff --git a/binaries/src/ViennaRNA/RNAforester/src/rna_alphabet.cpp b/binaries/src/ViennaRNA/RNAforester/src/rna_alphabet.cpp
new file mode 100644 (file)
index 0000000..a179c72
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/src/rna_alphabet.cpp
@@ -0,0 +1,33 @@
+#include "rna_alphabet.h"
+
+#include <cassert>
+
+int alpha2RNA_Alpha(char c)
+{
+       switch(c)
+       {
+               case ALPHA_BASE_A:
+                       return ALPHA_PRO_BASE_A;
+               case ALPHA_BASE_C:
+                       return ALPHA_PRO_BASE_C;
+               case ALPHA_BASE_G:
+                       return ALPHA_PRO_BASE_G;
+               case ALPHA_BASE_U:
+                       return ALPHA_PRO_BASE_U;
+               case ALPHA_GAP:
+                       return ALPHA_PRO_GAP;
+               case ALPHA_BASEPAIR:
+                       return ALPHA_PRO_BASEPAIR;
+               case ALPHA_BASE:
+                       return ALPHA_PRO_BASE;
+               default:
+                       assert(true);
+       }
+
+       return 0;       // never reached !!
+}
+
+
+
+
+