WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / RNAforester / src / wmatch.h

diff --git a/binaries/src/ViennaRNA/RNAforester/src/wmatch.h b/binaries/src/ViennaRNA/RNAforester/src/wmatch.h
new file mode 100644 (file)
index 0000000..62881b9
--- /dev/null
+++ b/binaries/src/ViennaRNA/RNAforester/src/wmatch.h
@@ -0,0 +1,40 @@
+#ifndef _WMATCH_H_
+#define _WMATCH_H_
+
+#ifdef __cplusplus
+extern "C"
+{
+#endif
+  
+  int *Weighted_Match (void *gptr,int type,int maximize);
+  
+  // pairs.c
+  void PAIR (int *outcome);
+  void MERGE_PAIRS (int v);
+  void LINK_PATH (int e);
+  void INSERT_PAIR ();
+
+  // pointer.c
+  void POINTER (int u, int v, int e);
+  void SCAN (int x, int del);
+
+  // readgraph.c
+  void SetUp (void* gptr, int type);
+  void SetStandard(Graph graph);
+  void SetEuclid(EuclidGraph graph);
+  void SetMatrix(MatrixGraph graph);
+
+  // termc.c
+  void SET_BOUNDS ();
+  void UNPAIR_ALL ();
+
+  // unpairs.c
+  void UNPAIR (int oldbase, int oldmate);
+  void REMATCH (int firstmate, int e) ;
+  void UNLINK (int oldbase);
+  
+#ifdef __cplusplus
+}
+#endif
+
+#endif