WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / configure.ac

diff --git a/binaries/src/ViennaRNA/configure.ac b/binaries/src/ViennaRNA/configure.ac
new file mode 100644 (file)
index 0000000..8f785d7
--- /dev/null
+++ b/binaries/src/ViennaRNA/configure.ac
@@ -0,0 +1,82 @@
+dnl Process this file with autoconf to produce a configure script.
+
+dnl Every other copy of the package version number gets its value from here
+AC_INIT([ViennaRNA],[2.1.2],[rna@tbi.univie.ac.at],[ViennaRNA], [http://www.tbi.univie.ac.a/~ivo/RNA])
+AC_PREREQ([2.59])
+AC_CONFIG_AUX_DIR(config)
+
+AC_SUBST(VERSION)
+
+m4_include([m4/package.m4])
+
+dnl change the default installation prefix
+dnl AC_PREFIX_DEFAULT(/usr/local/RNA)
+
+AM_SILENT_RULES([yes])
+AM_INIT_AUTOMAKE([1.11])
+
+dnl create a config.h file (Automake will add -DHAVE_CONFIG_H)
+AC_CONFIG_HEADERS([config.h])
+
+dnl configure options
+AM_WITH_DMALLOC
+
+AC_ARG_VAR(PERLPREFIX, [Prefix for installation of the Perl module. 
+By default the perl module is installed wherever Perl thinks it belongs, ignoring the $prefix used by configure])
+
+
+ISODATE=`date +%Y-%m-%d`
+AC_SUBST(ISODATE)
+
+AC_CANONICAL_HOST
+
+dnl Checks for programs.
+AC_PROG_CXX
+AC_PROG_CXXCPP
+AC_PROG_CC
+AC_PROG_CPP
+AC_PROG_CC_FPIC
+
+AC_ARG_VAR(FPIC,[compiler flag for generating PIC code that can be used in a shared library])
+
+if test "$GCC" = yes; then
+   AC_DEFINE(UNUSED, __attribute__ ((unused)), avoid warning about unused variables)
+else
+   AC_DEFINE(UNUSED,, only for gcc)
+fi
+
+AC_PROG_INSTALL
+AC_PROG_RANLIB
+AC_PROG_MAKE_SET
+AC_PROG_GREP
+AM_PROG_CC_C_O
+
+
+dnl Check for OpenMP and prepare flags
+AC_OPENMP
+AC_SUBST(OPENMP_CFLAGS)
+
+dnl Checks for libraries.
+AC_CHECK_LIB([m], [exp])
+
+dnl Checks for header files.
+AC_HEADER_STDC
+AC_HEADER_STDBOOL
+AC_CHECK_HEADERS([malloc.h float.h limits.h stdlib.h string.h strings.h unistd.h unistd.h math.h])
+
+dnl Checks for funtions
+AC_FUNC_MALLOC
+AC_FUNC_REALLOC
+AC_FUNC_STRTOD
+AC_CHECK_FUNCS([floor strdup strstr strchr strrchr strstr strtol strtoul pow rint sqrt erand48 memset memmove erand48])
+
+dnl Checks for typedefs, structures, and compiler characteristics.
+AC_C_CONST
+AC_TYPE_SIZE_T
+AC_C_INLINE([])
+
+AC_RNA_INIT
+
+AC_OUTPUT
+
+AC_RNA_NOTICE