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WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / 2Dfold_8h.html
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+   <div id="projectname">RNAlib-2.1.2
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+<div class="header">
+  <div class="summary">
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle">
+<div class="title">2Dfold.h File Reference<div class="ingroups"><a class="el" href="group__kl__neighborhood__mfe.html">Calculating MFE representatives of a Distance Based Partitioning</a></div></div>  </div>
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+  <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Include dependency graph for 2Dfold.h:</div>
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+<p><a href="2Dfold_8h_source.html">Go to the source code of this file.</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:gac9284f132cf0eaa0a2f43590eda05488"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structTwoDfold__vars.html">TwoDfold_vars</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__kl__neighborhood__mfe.html#gac9284f132cf0eaa0a2f43590eda05488">get_TwoDfold_variables</a> (const char *seq, const char *structure1, const char *structure2, int <a class="el" href="fold__vars_8h.html#af9202a1a09f5828dc731e2d9a10fa111">circ</a>)</td></tr>
+<tr class="memdesc:gac9284f132cf0eaa0a2f43590eda05488"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a structure of type <a class="el" href="structTwoDfold__vars.html" title="Variables compound for 2Dfold MFE folding.">TwoDfold_vars</a> prefilled with current global settings.  <a href="group__kl__neighborhood__mfe.html#gac9284f132cf0eaa0a2f43590eda05488"></a><br/></td></tr>
+<tr class="memitem:ga05bf4f31d216b1b160fd2d3d68e9b487"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__kl__neighborhood__mfe.html#ga05bf4f31d216b1b160fd2d3d68e9b487">destroy_TwoDfold_variables</a> (<a class="el" href="structTwoDfold__vars.html">TwoDfold_vars</a> *our_variables)</td></tr>
+<tr class="memdesc:ga05bf4f31d216b1b160fd2d3d68e9b487"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destroy a <a class="el" href="structTwoDfold__vars.html" title="Variables compound for 2Dfold MFE folding.">TwoDfold_vars</a> datastructure without memory loss.  <a href="group__kl__neighborhood__mfe.html#ga05bf4f31d216b1b160fd2d3d68e9b487"></a><br/></td></tr>
+<tr class="memitem:ga47da790166020558d27323aef489703e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structTwoDfold__solution.html">TwoDfold_solution</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__kl__neighborhood__mfe.html#ga47da790166020558d27323aef489703e">TwoDfoldList</a> (<a class="el" href="structTwoDfold__vars.html">TwoDfold_vars</a> *vars, int distance1, int distance2)</td></tr>
+<tr class="memdesc:ga47da790166020558d27323aef489703e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute MFE's and representative for distance partitioning.  <a href="group__kl__neighborhood__mfe.html#ga47da790166020558d27323aef489703e"></a><br/></td></tr>
+<tr class="memitem:gaf4dc05bf8fc1ea53acd7aeb798ba80c2"><td class="memItemLeft" align="right" valign="top">char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__kl__neighborhood__mfe.html#gaf4dc05bf8fc1ea53acd7aeb798ba80c2">TwoDfold_backtrack_f5</a> (unsigned int j, int k, int l, <a class="el" href="structTwoDfold__vars.html">TwoDfold_vars</a> *vars)</td></tr>
+<tr class="memdesc:gaf4dc05bf8fc1ea53acd7aeb798ba80c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Backtrack a minimum free energy structure from a 5' section of specified length.  <a href="group__kl__neighborhood__mfe.html#gaf4dc05bf8fc1ea53acd7aeb798ba80c2"></a><br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
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