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+<a href="dist__vars_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_DIST_VARS_H__</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_DIST_VARS_H__</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="preprocessor"></span></div>
+<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="keyword">extern</span> <span class="keywordtype">int</span> <a class="code" href="dist__vars_8h.html#aa03194c513af6b860e7b33e370b82bdb" title="Produce an alignment of the two structures being compared by tracing the editing path giving the mini...">edit_backtrack</a>;</div>
+<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> </div>
+<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">extern</span> <span class="keywordtype">char</span> *<a class="code" href="dist__vars_8h.html#ac1605fe3448ad0a0b809c4fb8f6a854a" title="Contains the two aligned structures after a call to one of the distance functions with edit_backtrack...">aligned_line</a>[4];</div>
+<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
+<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="keyword">extern</span> <span class="keywordtype">int</span> <a class="code" href="dist__vars_8h.html#ab65d8ff14c6937612212526a60f59b3c" title="Specify the cost matrix to be used for distance calculations.">cost_matrix</a>;</div>
+<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div>
+<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">/* Global type defs for Distance-Package */</span></div>
+<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> </div>
+<div class="line"><a name="l00033"></a><span class="lineno"><a class="code" href="structPostorder__list.html"> 33</a></span> <span class="keyword">typedef</span> <span class="keyword">struct </span>{</div>
+<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordtype">int</span> type;</div>
+<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keywordtype">int</span> weight;</div>
+<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keywordtype">int</span> father;</div>
+<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">int</span> sons;</div>
+<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">int</span> leftmostleaf;</div>
+<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  } <a class="code" href="structPostorder__list.html">Postorder_list</a>;</div>
+<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
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+<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  } <a class="code" href="structTree.html">Tree</a>;</div>
+<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
+<div class="line"><a name="l00046"></a><span class="lineno"><a class="code" href="structswString.html"> 46</a></span> <span class="keyword">typedef</span> <span class="keyword">struct </span>{</div>
+<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keywordtype">int</span> type;</div>
+<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keywordtype">int</span> sign;</div>
+<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keywordtype">float</span> weight;</div>
+<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  } <a class="code" href="structswString.html">swString</a>;</div>
+<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor">#endif</span></div>
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