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WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / energy__const_8h.html
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+</div>
+</div>
+<p><a href="energy__const_8h_source.html">Go to the source code of this file.</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="define-members"></a>
+Macros</h2></td></tr>
+<tr class="memitem:ab1e4a8d82f24ed5db01dde5f25269cf1"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">GASCONST</a>&#160;&#160;&#160;1.98717  /* in [cal/K] */</td></tr>
+<tr class="memitem:a307c72605e3713972b4f4fb2d53ea20e"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">K0</a>&#160;&#160;&#160;273.15</td></tr>
+<tr class="memitem:a12c2040f25d8e3a7b9e1c2024c618cb6"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">INF</a>&#160;&#160;&#160;10000000 /* (INT_MAX/10) */</td></tr>
+<tr class="memitem:a5064c29ab2d1e20c2304b3c67562774d"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">FORBIDDEN</a>&#160;&#160;&#160;9999</td></tr>
+<tr class="memitem:a96a9822fa134450197dd454b1478a193"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193">BONUS</a>&#160;&#160;&#160;10000</td></tr>
+<tr class="memitem:a5e75221c779d618eab81e096f37e32ce"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce">NBPAIRS</a>&#160;&#160;&#160;7</td></tr>
+<tr class="memitem:ae646250fd59311356c7e5722a81c3a96"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96">TURN</a>&#160;&#160;&#160;3</td></tr>
+<tr class="memitem:ad1bd6eabac419670ddd3c9ed82145988"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988">MAXLOOP</a>&#160;&#160;&#160;30</td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<div class="textblock"><p>energy constants </p>
+</div><hr/><h2>Macro Definition Documentation</h2>
+<a class="anchor" id="ab1e4a8d82f24ed5db01dde5f25269cf1"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define GASCONST&#160;&#160;&#160;1.98717  /* in [cal/K] */</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>The gas constant </p>
+
+</div>
+</div>
+<a class="anchor" id="a307c72605e3713972b4f4fb2d53ea20e"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define K0&#160;&#160;&#160;273.15</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>0 deg Celsius in Kelvin </p>
+
+</div>
+</div>
+<a class="anchor" id="a12c2040f25d8e3a7b9e1c2024c618cb6"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define INF&#160;&#160;&#160;10000000 /* (INT_MAX/10) */</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>Infinity as used in minimization routines </p>
+
+</div>
+</div>
+<a class="anchor" id="a5064c29ab2d1e20c2304b3c67562774d"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define FORBIDDEN&#160;&#160;&#160;9999</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>forbidden </p>
+
+</div>
+</div>
+<a class="anchor" id="a96a9822fa134450197dd454b1478a193"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define BONUS&#160;&#160;&#160;10000</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>bonus contribution </p>
+
+</div>
+</div>
+<a class="anchor" id="a5e75221c779d618eab81e096f37e32ce"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define NBPAIRS&#160;&#160;&#160;7</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>The number of distinguishable base pairs </p>
+
+</div>
+</div>
+<a class="anchor" id="ae646250fd59311356c7e5722a81c3a96"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define TURN&#160;&#160;&#160;3</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>The minimum loop length </p>
+
+</div>
+</div>
+<a class="anchor" id="ad1bd6eabac419670ddd3c9ed82145988"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define MAXLOOP&#160;&#160;&#160;30</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>The maximum loop length </p>
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="energy__const_8h.html">energy_const.h</a></li>
+    <li class="footer">Generated on Wed Jul 24 2013 13:38:58 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
+  </ul>
+</div>
+</body>
+</html>