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WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / globals_defs.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<title>RNAlib-2.1.2: Globals</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript">
+  $(document).ready(initResizable);
+</script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td style="padding-left: 0.5em;">
+   <div id="projectname">RNAlib-2.1.2
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.1.1 -->
+  <div id="navrow1" class="tabs">
+    <ul class="tablist">
+      <li><a href="index.html"><span>Main&#160;Page</span></a></li>
+      <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
+      <li><a href="modules.html"><span>Modules</span></a></li>
+      <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
+      <li class="current"><a href="files.html"><span>Files</span></a></li>
+    </ul>
+  </div>
+  <div id="navrow2" class="tabs2">
+    <ul class="tablist">
+      <li><a href="files.html"><span>File&#160;List</span></a></li>
+      <li class="current"><a href="globals.html"><span>Globals</span></a></li>
+    </ul>
+  </div>
+  <div id="navrow3" class="tabs2">
+    <ul class="tablist">
+      <li><a href="globals.html"><span>All</span></a></li>
+      <li><a href="globals_func.html"><span>Functions</span></a></li>
+      <li><a href="globals_vars.html"><span>Variables</span></a></li>
+      <li class="current"><a href="globals_defs.html"><span>Macros</span></a></li>
+    </ul>
+  </div>
+  <div id="navrow4" class="tabs3">
+    <ul class="tablist">
+      <li><a href="#index_b"><span>b</span></a></li>
+      <li><a href="#index_f"><span>f</span></a></li>
+      <li><a href="#index_g"><span>g</span></a></li>
+      <li><a href="#index_i"><span>i</span></a></li>
+      <li><a href="#index_k"><span>k</span></a></li>
+      <li><a href="#index_m"><span>m</span></a></li>
+      <li><a href="#index_n"><span>n</span></a></li>
+      <li><a href="#index_s"><span>s</span></a></li>
+      <li><a href="#index_t"><span>t</span></a></li>
+      <li><a href="#index_v"><span>v</span></a></li>
+      <li><a href="#index_x"><span>x</span></a></li>
+    </ul>
+  </div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+$(document).ready(function(){initNavTree('globals_defs.html','');});
+</script>
+<div id="doc-content">
+<div class="contents">
+&#160;
+
+<h3><a class="anchor" id="index_b"></a>- b -</h3><ul>
+<li>BONUS
+: <a class="el" href="energy__const_8h.html#a96a9822fa134450197dd454b1478a193">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_f"></a>- f -</h3><ul>
+<li>FILENAME_ID_LENGTH
+: <a class="el" href="utils_8h.html#a33c3b1826b8e2739f09f111ec719ded5">utils.h</a>
+</li>
+<li>FILENAME_MAX_LENGTH
+: <a class="el" href="utils_8h.html#afb228174279df9486a5cb56ac0bc79a3">utils.h</a>
+</li>
+<li>FORBIDDEN
+: <a class="el" href="energy__const_8h.html#a5064c29ab2d1e20c2304b3c67562774d">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_g"></a>- g -</h3><ul>
+<li>GASCONST
+: <a class="el" href="energy__const_8h.html#ab1e4a8d82f24ed5db01dde5f25269cf1">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_i"></a>- i -</h3><ul>
+<li>INF
+: <a class="el" href="energy__const_8h.html#a12c2040f25d8e3a7b9e1c2024c618cb6">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_k"></a>- k -</h3><ul>
+<li>K0
+: <a class="el" href="energy__const_8h.html#a307c72605e3713972b4f4fb2d53ea20e">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_m"></a>- m -</h3><ul>
+<li>MAX2
+: <a class="el" href="utils_8h.html#a33297b3679c713b0c4d897cd0fe3b122">utils.h</a>
+</li>
+<li>MAX3
+: <a class="el" href="utils_8h.html#a8d577123d2e66d2b7d0bf9af6e172b93">utils.h</a>
+</li>
+<li>MAXALPHA
+: <a class="el" href="data__structures_8h.html#a05a5ffe718aa431d97419a12fb082379">data_structures.h</a>
+</li>
+<li>MAXDOS
+: <a class="el" href="data__structures_8h.html#a5ec740b80afb4906ba4311dbd8ddbd89">data_structures.h</a>
+</li>
+<li>MAXLOOP
+: <a class="el" href="energy__const_8h.html#ad1bd6eabac419670ddd3c9ed82145988">energy_const.h</a>
+</li>
+<li>MIN2
+: <a class="el" href="utils_8h.html#ae0b9cd0ce090bd69b951aa73e8fa4f7d">utils.h</a>
+</li>
+<li>MIN3
+: <a class="el" href="utils_8h.html#a721b8d5f3abef17f10293f1f7f8c958e">utils.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_n"></a>- n -</h3><ul>
+<li>NBPAIRS
+: <a class="el" href="energy__const_8h.html#a5e75221c779d618eab81e096f37e32ce">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_s"></a>- s -</h3><ul>
+<li>STR
+: <a class="el" href="utils_8h.html#a6388870e639eee9c0a69446876f1f8cc">utils.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_t"></a>- t -</h3><ul>
+<li>TURN
+: <a class="el" href="energy__const_8h.html#ae646250fd59311356c7e5722a81c3a96">energy_const.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_v"></a>- v -</h3><ul>
+<li>VRNA_CONSTRAINT_ALL
+: <a class="el" href="utils_8h.html#a0a697f77a6fbb10f34e16fa68ed9e655">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_ANG_BRACK
+: <a class="el" href="utils_8h.html#a0512d790f738742cbdcf3f7c87b46f48">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_DOT
+: <a class="el" href="utils_8h.html#a55e1d16fd693ae9ec8e987b0750da804">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_G
+: <a class="el" href="utils_8h.html#a99dc6b23dc4080a76e2ed1a81c20e94d">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_MULTILINE
+: <a class="el" href="utils_8h.html#a7d725ef525b29891abef3f1ed42599a4">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_NO_HEADER
+: <a class="el" href="utils_8h.html#a08d12a9a846ea593b7171d277c9f033f">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_PIPE
+: <a class="el" href="utils_8h.html#a4e8d7120619b21df0309af425acbc9a2">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_RND_BRACK
+: <a class="el" href="utils_8h.html#aa20bfca4bb2903c8548000a33d7bbb53">utils.h</a>
+</li>
+<li>VRNA_CONSTRAINT_X
+: <a class="el" href="utils_8h.html#a077c56550c915d4516d84a5ed8d051f4">utils.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_ALL
+: <a class="el" href="group__energy__parameters__convert.html#ga8dc6aee5a806c49b71557152f9616bc4">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_BULGE
+: <a class="el" href="group__energy__parameters__convert.html#ga7092fe0be4de6f02cc0bf08e81af726a">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_DANGLE3
+: <a class="el" href="group__energy__parameters__convert.html#ga34a8a5479ef885834ef32f3fb43d79bc">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_DANGLE5
+: <a class="el" href="group__energy__parameters__convert.html#ga036ffd996d8c8a9acf631760dd1da24b">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_DUMP
+: <a class="el" href="group__energy__parameters__convert.html#gac86976e9c2a55b3a6481ea60044f6098">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_HP
+: <a class="el" href="group__energy__parameters__convert.html#gaf66fe2cb11dfcfd32d791049c254a8a4">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_INT
+: <a class="el" href="group__energy__parameters__convert.html#gac5c2289fdf8ff1b980976d1613ff943a">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_INT_11
+: <a class="el" href="group__energy__parameters__convert.html#ga079aafefd5f8ab57ee5120099a34bd25">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_INT_21
+: <a class="el" href="group__energy__parameters__convert.html#gacf770881d9034431ebe741642342a1f9">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_INT_22
+: <a class="el" href="group__energy__parameters__convert.html#gaa307671e2631cdacad9cbe4c6583b05f">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MISC
+: <a class="el" href="group__energy__parameters__convert.html#ga46d5b1535ae86060b6317565b7c6b40b">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_ML
+: <a class="el" href="group__energy__parameters__convert.html#gaf2c8755d64eff3852aa45df9ac80a4fe">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_EXT
+: <a class="el" href="group__energy__parameters__convert.html#gaf14ead7ef1fdbe725ade653750fc51e3">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_HP
+: <a class="el" href="group__energy__parameters__convert.html#gaa892c7b4957459090f3e08da298cc347">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_INT
+: <a class="el" href="group__energy__parameters__convert.html#ga4ff223fb1f9c62cd92d9ab811ad03d55">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_INT_1N
+: <a class="el" href="group__energy__parameters__convert.html#gaf5d3743219f83c6348155cd81e755bbb">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_INT_23
+: <a class="el" href="group__energy__parameters__convert.html#ga78382ec622ba99e0ac2262317bdd7316">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_MM_MULTI
+: <a class="el" href="group__energy__parameters__convert.html#gae67af9f1cdf7baf2865481282a5d1034">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_NINIO
+: <a class="el" href="group__energy__parameters__convert.html#ga2eb0462f16939ddacdaf751a88d675ce">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_SPECIAL_HP
+: <a class="el" href="group__energy__parameters__convert.html#gaa1ff48a79642d69579d1766561ec6db6">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_STACK
+: <a class="el" href="group__energy__parameters__convert.html#gad23522d63f8d4c50d5a5deee9bee3ef2">convert_epars.h</a>
+</li>
+<li>VRNA_CONVERT_OUTPUT_VANILLA
+: <a class="el" href="group__energy__parameters__convert.html#ga0d4e8a836bb4864ab5129c085dbf592d">convert_epars.h</a>
+</li>
+<li>VRNA_INPUT_BLANK_LINE
+: <a class="el" href="utils_8h.html#a305474b93ccb79ae4c7754016a8ddd84">utils.h</a>
+</li>
+<li>VRNA_INPUT_COMMENT
+: <a class="el" href="utils_8h.html#af2062e0eeefffd3ed639af460b3d4fab">utils.h</a>
+</li>
+<li>VRNA_INPUT_CONSTRAINT
+: <a class="el" href="utils_8h.html#ac08a9df45b9721b97a47dbfe7a6e5f85">utils.h</a>
+</li>
+<li>VRNA_INPUT_ERROR
+: <a class="el" href="utils_8h.html#ad403c9ea58f1836689404c2931419c8c">utils.h</a>
+</li>
+<li>VRNA_INPUT_FASTA_HEADER
+: <a class="el" href="utils_8h.html#a2f0d8069e93d3ac54d9320d6bdb8e7e7">utils.h</a>
+</li>
+<li>VRNA_INPUT_MISC
+: <a class="el" href="utils_8h.html#a8e3241b321c9c1a78a69e59e2e019a71">utils.h</a>
+</li>
+<li>VRNA_INPUT_NO_REST
+: <a class="el" href="utils_8h.html#a7a2e8c50a0c7ce82e60da1016e1367fd">utils.h</a>
+</li>
+<li>VRNA_INPUT_NO_SPAN
+: <a class="el" href="utils_8h.html#a0de536599b881c787b0943a2671da476">utils.h</a>
+</li>
+<li>VRNA_INPUT_NO_TRUNCATION
+: <a class="el" href="utils_8h.html#a086742158293217a46ae2f71bb296937">utils.h</a>
+</li>
+<li>VRNA_INPUT_NOSKIP_BLANK_LINES
+: <a class="el" href="utils_8h.html#ab4db885222b3b69608310d7c7e63e286">utils.h</a>
+</li>
+<li>VRNA_INPUT_NOSKIP_COMMENTS
+: <a class="el" href="utils_8h.html#a0f6311f11bed1842e3a527ab27b294c6">utils.h</a>
+</li>
+<li>VRNA_INPUT_QUIT
+: <a class="el" href="utils_8h.html#a72f3c6ca5c83d2b9baed2922d19c403d">utils.h</a>
+</li>
+<li>VRNA_INPUT_SEQUENCE
+: <a class="el" href="utils_8h.html#a8566d6787972100e68b5a2a159b4cf45">utils.h</a>
+</li>
+<li>VRNA_OPTION_MULTILINE
+: <a class="el" href="utils_8h.html#abec89c09874528c6cb73140a4c3d86d7">utils.h</a>
+</li>
+<li>VRNA_PLOT_TYPE_CIRCULAR
+: <a class="el" href="plot__layouts_8h.html#a8c9eac631348da92136c8363ecdd9fb9">plot_layouts.h</a>
+</li>
+<li>VRNA_PLOT_TYPE_NAVIEW
+: <a class="el" href="plot__layouts_8h.html#a94d4c863ecac2f220f76658afb92f964">plot_layouts.h</a>
+</li>
+<li>VRNA_PLOT_TYPE_SIMPLE
+: <a class="el" href="plot__layouts_8h.html#ae6d17b9f0a53cf5205a9181e0f8422e9">plot_layouts.h</a>
+</li>
+</ul>
+
+
+<h3><a class="anchor" id="index_x"></a>- x -</h3><ul>
+<li>XSTR
+: <a class="el" href="utils_8h.html#a03943706e48069237cd57f2d35ca987e">utils.h</a>
+</li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated on Wed Jul 24 2013 13:39:01 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
+  </ul>
+</div>
+</body>
+</html>